update docs (0f4222a6) · Commits · github_fork / HdWGCNA

NAMESPACE

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		@@ -34,10 +34,8 @@ export(GetMultiExpr)
		export(GetNetworkData)
		export(GetPFMList)
		export(GetPowerTable)
		export(GetROCData)
		export(GetTOM)
		export(GetWGCNAGenes)
		export(GetWGCNAGroup)
		export(GetWGCNAParams)
		export(HubGeneNetworkPlot)
		export(MetacellsByGroups)
		@@ -102,9 +100,7 @@ export(SetMultiExpr)
		export(SetNetworkData)
		export(SetPFMList)
		export(SetPowerTable)
		export(SetROCData)
		export(SetWGCNAGenes)
		export(SetWGCNAGroup)
		export(SetWGCNAParams)
		export(SetupForWGCNA)
		export(TestSoftPowers)

NEWS.md

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		# hdWGCNA 0.2.16 (2023-03-27)
		# hdWGCNA 0.2.17 (2023-03-27)
		## Added
		- None.

		## Changes
		- New error checks in `SetupForWGCNA` and `SelectNetworkGenes`

		# hdWGCNA 0.2.16 (2023-03-020)
		# hdWGCNA 0.2.16 (2023-03-20)
		## Added
		- `PlotDMEsLollipop` function to visualize differential module eigengenes.

R/RunModuleUMAP.R

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		@@ -11,7 +11,6 @@
		#' @import uwot
		#' @import Seurat
		#' @export
		#' @examples
		RunModuleUMAP <- function(
		seurat_obj,
		n_hubs = 10,

docs/news/index.html

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		@@ -113,26 +113,26 @@
		</div>

		<div class="section level2">
		<h2 class="page-header" data-toc-text="0.2.16" id="hdwgcna-0216-2023-03-27">hdWGCNA 0.2.16 (2023-03-27)<a class="anchor" aria-label="anchor" href="#hdwgcna-0216-2023-03-27"></a></h2>
		<h2 class="page-header" data-toc-text="0.2.17" id="hdwgcna-0217-2023-03-27">hdWGCNA 0.2.17 (2023-03-27)<a class="anchor" aria-label="anchor" href="#hdwgcna-0217-2023-03-27"></a></h2>
		<div class="section level3">
		<h3 id="added-0-2-16">Added<a class="anchor" aria-label="anchor" href="#added-0-2-16"></a></h3>
		<h3 id="added-0-2-17">Added<a class="anchor" aria-label="anchor" href="#added-0-2-17"></a></h3>
		<ul><li>None.</li>
		</ul></div>
		<div class="section level3">
		<h3 id="changes-0-2-16">Changes<a class="anchor" aria-label="anchor" href="#changes-0-2-16"></a></h3>
		<h3 id="changes-0-2-17">Changes<a class="anchor" aria-label="anchor" href="#changes-0-2-17"></a></h3>
		<ul><li>New error checks in <code>SetupForWGCNA</code> and <code>SelectNetworkGenes</code>
		</li>
		</ul></div>
		</div>
		<div class="section level2">
		<h2 class="page-header" data-toc-text="0.2.16" id="hdwgcna-0216-2023-03-020">hdWGCNA 0.2.16 (2023-03-020)<a class="anchor" aria-label="anchor" href="#hdwgcna-0216-2023-03-020"></a></h2>
		<h2 class="page-header" data-toc-text="0.2.16" id="hdwgcna-0216-2023-03-20">hdWGCNA 0.2.16 (2023-03-20)<a class="anchor" aria-label="anchor" href="#hdwgcna-0216-2023-03-20"></a></h2>
		<div class="section level3">
		<h3 id="added-0-2-16-1">Added<a class="anchor" aria-label="anchor" href="#added-0-2-16-1"></a></h3>
		<h3 id="added-0-2-16">Added<a class="anchor" aria-label="anchor" href="#added-0-2-16"></a></h3>
		<ul><li>
		<code>PlotDMEsLollipop</code> function to visualize differential module eigengenes.</li>
		</ul></div>
		<div class="section level3">
		<h3 id="changes-0-2-16-1">Changes<a class="anchor" aria-label="anchor" href="#changes-0-2-16-1"></a></h3>
		<h3 id="changes-0-2-16">Changes<a class="anchor" aria-label="anchor" href="#changes-0-2-16"></a></h3>
		<ul><li>New error checks in <code>MetacellsByGroups</code>
		</li>
		</ul></div>

docs/pkgdown.yml

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		@@ -19,7 +19,7 @@ articles:
		projecting_modules_cross: projecting_modules_cross.html
		pseudotime: pseudotime.html
		sctransform: sctransform.html
		last_built: 2023-03-28T01:19Z
		last_built: 2023-03-28T18:57Z
		urls:
		reference: https://smorabit.github.io/hdWGCNA/reference
		article: https://smorabit.github.io/hdWGCNA/articles

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