testing code

Package: hdWGCNA

Title: hdWGCNA

Version: 0.2.16

Version: 0.2.17

Authors@R: c(

    person("Sam", "Morabito", , "smorabit@uci.edu", role = c("aut", "cre"),

           comment = c(ORCID = "0000-0002-7768-4856")),

Roxygen: list(markdown = TRUE)

RoxygenNote: 7.1.2

URL: https://smorabit.github.io/hdWGCNA/

Imports: WGCNA, Seurat, Matrix, harmony

Imports: WGCNA, Seurat, Matrix, harmony, igraph, ggplot2, dplyr

Suggests: testthat (>= 3.0.0)

Config/testthat/edition: 3

Depends: 

    R (>= 2.10)

 No newline at end of file

export(AvgModuleExpr)

export(BinPseudotime)

export(ComputeModuleEigengene)

export(ConstructMetacells)

export(ConstructMetaspots)

export(ConstructNetwork)

# hdWGCNA 0.2.16 (2023-03-02)

# hdWGCNA 0.2.16 (2023-03-27)

## Added

- None.

## Changes

- New error checks in `SetupForWGCNA` and `SelectNetworkGenes`

# hdWGCNA 0.2.16 (2023-03-020)

## Added

- `PlotDMEsLollipop` function to visualize differential module eigengenes.

#' @param wgcna_name name of the WGCNA experiment

#' @import Seurat

#' @import harmony

#' @export

ComputeModuleEigengene <- function(

  seurat_obj,

  cur_mod,

  print(dim(datExpr_query))

  print('Run Module Preservation')

  print(ref_modules)

  # run the module preservation test:

  mp <- WGCNA::modulePreservation(