Commits · e4d29aa9708987549d81c69cc7380d8f3551bcde · github_fork / Chromap

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Nov 14, 2022
- A config to pass candidate generating parameters. · e4d29aa9
  Haowen Zhang authored Aug 09, 2022
  
  e4d29aa9
- Rename some variables and remove unused variables. · bcb3bd05
  Haowen Zhang authored Aug 09, 2022
  
  bcb3bd05
- Rename seed hit lists. · 69e2b61f
  Haowen Zhang authored Aug 09, 2022
  
  69e2b61f
- Use functions to convert hits to positions. · a7bf985e
  Haowen Zhang authored Aug 09, 2022
  
  a7bf985e
- Rename a minimizer position as a hit. · 4ffcc6aa
  Haowen Zhang authored Aug 08, 2022
  
  4ffcc6aa
- A func to compute candidate position. · 2f4c02c9
  Haowen Zhang authored Aug 04, 2022
  
  2f4c02c9
- Use a func to perform hit heap merge. · c072a905
  Haowen Zhang authored Jul 27, 2022
  
  c072a905
- Remove code copy in index construction. · abab51fd
  Haowen Zhang authored Jul 26, 2022
  
  abab51fd
- Add more comment for khash in Index. · b7ca7e1f
  Haowen Zhang authored Jul 26, 2022
  
  b7ca7e1f
Nov 04, 2022
- Bump cache version in CI. · 25e218d6
  swiftgenomics authored Nov 03, 2022
  
  25e218d6
- Downgrade openmp version in CI. · 6864f7fa
  swiftgenomics authored Nov 03, 2022
  
  6864f7fa
- Update openmp version · eb30db9b
  swiftgenomics authored Nov 03, 2022
  
  eb30db9b
Jul 27, 2022
- Implement a minimizer class and its generator. · 22f52653
  Haowen Zhang authored Jul 21, 2022
  22f52653
- More encapsulation for mapping metadata. · fc69224c
  Haowen Zhang authored Jul 20, 2022
  
  fc69224c
- Remove debug code. · 774eee12
  Haowen Zhang authored Jul 19, 2022
  
  774eee12
- Rename func. · 33723c28
  Haowen Zhang authored Jul 19, 2022
  
  33723c28
- Removed unused class variables. · 2b8a6f03
  Haowen Zhang authored Jul 18, 2022
  
  2b8a6f03
- Introduce DraftMappingGenerator. · 51d51df0
  Haowen Zhang authored Jul 18, 2022
  
  51d51df0
- Rename funcs and variables for draft mappings. · 9d474b4f
  Haowen Zhang authored Jul 18, 2022
  
  9d474b4f
- Fix wrong conversion in DraftMapping. · a7fe07df
  Haowen Zhang authored Jul 18, 2022
  
  a7fe07df
- Fix a bug in candidate sorting. · ab5879fb
  Haowen Zhang authored Jul 18, 2022
  
  ab5879fb
- Introduce DraftMapping. · 505e2bac
  Haowen Zhang authored Jul 18, 2022
  
  505e2bac
- Refactor code. · f3be2b46
  Haowen Zhang authored Jul 18, 2022
  f3be2b46
- Reorder the funcs to match the declaration. · e26862e4
  Haowen Zhang authored Jul 18, 2022
  
  e26862e4
- Func to get candidate rid and position. · 818e4b44
  Haowen Zhang authored Jul 18, 2022
  
  818e4b44
- Refactor VerifyCandidates. · 05705cec
  Haowen Zhang authored Jul 18, 2022
  05705cec
- Func to validate candidate position range. · 411e025a
  Haowen Zhang authored Jul 18, 2022
  
  411e025a
- Func to get a mapping supported by all minimizers. · c5a8ca7e
  Haowen Zhang authored Jul 15, 2022
  
  c5a8ca7e
Jul 20, 2022
- Fix a bug for hashing 32 bp sequences. · 7f283b6f
  Haowen Zhang authored Jul 19, 2022
  
  7f283b6f
May 09, 2022
- Update the links of the badges. · e8851a40
  Haowen Zhang authored May 08, 2022
  
  e8851a40
May 05, 2022
- Update version. · a97dfe22
  Haowen Zhang authored May 04, 2022
  
  View commits for tag v0.2.3 v0.2.3
  
  a97dfe22
- Better variable names. · d389ea32
  Haowen Zhang authored Apr 26, 2022
  
  d389ea32
May 04, 2022
- Update badges · d7f5b552
  Haowen Zhang authored May 04, 2022
  
  d7f5b552
- Remove manual line breaking · 7f0557d7
  Haowen Zhang authored May 04, 2022
  
  7f0557d7
Apr 21, 2022
- Reset range to default when the format is empty. · e8c94fc5
  Haowen Zhang authored Apr 20, 2022
  
  e8c94fc5
- Skip parsing when the format is empty. · eb489633
  Haowen Zhang authored Apr 20, 2022
  
  eb489633
- Explicitly use default range to construct batch. · 31537f08
  Haowen Zhang authored Apr 20, 2022
  
  31537f08
- Require effective range as SequenceBatch parameter. · da19c8cb
  Haowen Zhang authored Apr 20, 2022
  da19c8cb
- Add more comment for strand. · 97b0b0d2
  Haowen Zhang authored Apr 20, 2022
  
  97b0b0d2
- Rename IsFullRange() and make it private. · 0c830c66
  Haowen Zhang authored Apr 20, 2022
  
  0c830c66

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Commits · e4d29aa9708987549d81c69cc7380d8f3551bcde