Commits · ccfc5109d38369a95a01cb9131f58f7b18cc2ede · github_fork / Chromap

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Feb 23, 2020
- Completely separate unique mapping and MAPQ filter · ccfc5109
  Haowen Zhang authored Feb 22, 2020
  
  ccfc5109
Feb 20, 2020
- use a driver class to simplify main · 89d61ef3
  Haowen Zhang authored Feb 20, 2020
  
  89d61ef3
- separate unique mapping only and mapq threshold · 69f9fa00
  Haowen Zhang authored Feb 19, 2020
  
  69f9fa00
Feb 07, 2020
- add argument types · b89a90a5
  Haowen Zhang authored Feb 06, 2020
  
  b89a90a5
- group arguments · cf0d4aa0
  Haowen Zhang authored Feb 06, 2020
  
  cf0d4aa0
- update argument parser · e4b14754
  Haowen Zhang authored Feb 06, 2020
  
  e4b14754
Jan 11, 2020
- add ksw · 0f275fe4
  Haowen Zhang authored Jan 10, 2020
  
  0f275fe4
Dec 12, 2019
- improve mapq and add recalibration · 00acdedd
  Haowen Zhang authored Dec 12, 2019
  
  00acdedd
- random kmer order on both strands · 3e5b6171
  Haowen Zhang authored Dec 12, 2019
  
  3e5b6171
Nov 19, 2019
- fixed a bug in saving index · 3e80208c
  Haowen Zhang authored Nov 18, 2019
  
  3e80208c
Nov 18, 2019
- implement my own IITree and fix an overflow bug · 5129e6fc
  Haowen Zhang authored Nov 18, 2019
  
  5129e6fc
Nov 17, 2019
- make allocation distance as a parameter · 10aa6e24
  Haowen Zhang authored Nov 16, 2019
  
  10aa6e24
Nov 14, 2019
- output in BED for single-cell data · 59fb66ac
  Haowen Zhang authored Nov 13, 2019
  
  59fb66ac
Nov 02, 2019
- implement multi-thread single-end read mapping · cf9ac497
  Haowen Zhang authored Nov 02, 2019
  
  cf9ac497
Oct 30, 2019
- refactor code · 480fa351
  Haowen Zhang authored Oct 30, 2019
  
  480fa351
- implement Tn5 shift · 661da43a
  Haowen Zhang authored Oct 29, 2019
  
  661da43a
- refactor code and support output format selection · 7ba010ee
  Haowen Zhang authored Oct 29, 2019
  
  7ba010ee
Oct 26, 2019
- refactor code and make results reproducible · 0616aeac
  Haowen Zhang authored Oct 25, 2019
  
  0616aeac
Oct 25, 2019
- initial commit · 4e401aef
  Haowen Zhang authored Oct 25, 2019
  
  4e401aef
- Initial commit · 552f2c95
  Haowen Zhang authored Oct 24, 2019
  
  552f2c95

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Commits · ccfc5109d38369a95a01cb9131f58f7b18cc2ede