Bump minimum R-Version to 3.6 (df1c2640) · Commits · github_fork / DTUrtle

.github/workflows/R-CMD-check.yaml

+6 −2

Original line number	Diff line number	Diff line
		@@ -22,7 +22,6 @@ jobs:
		- {os: windows-latest, r: '4.0'}
		- {os: ubuntu-latest, r: '4.0', http-user-agent: 'release'}
		- {os: ubuntu-latest, r: '3.6'}
		- {os: ubuntu-latest, r: '3.4'}

		env:
		R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
		@@ -40,12 +39,17 @@ jobs:
		http-user-agent: ${{ matrix.config.http-user-agent }}
		use-public-rspm: true

		- name: Install libcurl for Rhtslib
		if: runner.os == 'Linux'
		run: \|
		sudo apt install -y libcurl-dev

		- name: Install R dependencies
		run: \|
		install.packages(c("remotes","BiocManager"))
		# set Bioc Goettingen mirror
		options("BioC_mirror"="https://ftp.gwdg.de/pub/misc/bioconductor")
		BiocManager::install(c("BiocParallel", "GenomicRanges", "Gviz", "rtracklayer", "stageR", "tximport", "DESeq2", "GenomicFeatures"))
		BiocManager::install(c("BiocParallel", "GenomicRanges", "Gviz", "rtracklayer", "stageR", "tximport", "DESeq2", "GenomicFeatures", "glmGamPoi", "apeglm", "GenomeInfoDb"))
		remotes::install_deps(dependencies = TRUE)
		remotes::install_cran("rcmdcheck")
		shell: Rscript {0}

+1 −1

Original line number	Diff line number	Diff line
		@@ -8,7 +8,7 @@ Description: Easily perform and visualize Differential Transcript Usage (DTU) an
		License: GPL (>= 3) + file LICENSE
		Encoding: UTF-8
		LazyData: true
		Depends: R (>= 3.4.0), sparseDRIMSeq
		Depends: R (>= 3.6.0), sparseDRIMSeq
		Imports:
		Matrix,
		tximport,