Commit c86ac04d authored by tekath's avatar tekath
Browse files

Unified yaml R dependency statements

parent 2f6b57db
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+3 −7
Original line number Diff line number Diff line
@@ -40,15 +40,11 @@ jobs:
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true

      - name: Install Remotes and BiocManager
      - name: Install R dependencies
        run: |
          install.packages(c("remotes","BiocManager"))
          # set Bioc Goettingen mirror
          options("BioC_mirror"="https://ftp.gwdg.de/pub/misc/bioconductor")
        shell: Rscript {0}
          
      - name: Install R dependencies
        run: |
          BiocManager::install(c("BiocParallel", "GenomicRanges", "Gviz", "rtracklayer", "stageR", "tximport", "DESeq2", "GenomicFeatures"))
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("rcmdcheck")