skip system dependency section in yaml

            options("BioC_mirror"="https://ftp.gwdg.de/pub/misc/bioconductor")

        shell: Rscript {0}

      - name: Install system dependencies

        if: runner.os == 'Linux'

        run: |

          while read -r cmd

          do

            eval sudo $cmd

          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "latest"))')

      - name: Install dependencies

      - name: Install R dependencies

        run: |

          BiocManager::install(c("BiocParallel", "GenomicRanges", "Gviz", "rtracklayer", "stageR", "tximport", "DESeq2", "GenomicFeatures"))

          remotes::install_deps(dependencies = TRUE)