Loading workflows/cutandrun.nf +3 −3 Original line number Diff line number Diff line Loading @@ -201,8 +201,6 @@ workflow CUTANDRUN { } .set { ch_fastq } } // INPUT_CHECK.out.reads | view /* * MODULE: Concatenate FastQ files from same sample if required Loading Loading @@ -279,7 +277,7 @@ workflow CUTANDRUN { } } //EXAMPLE CHANNEL STRUCT: [[id:h3k27me3_R1, group:h3k27me3, replicate:1, single_end:false], [BAM]] ch_samtools_bam | view // ch_samtools_bam | view /* * SUBWORKFLOW: Filter reads based on quality metrics Loading Loading @@ -391,6 +389,8 @@ workflow CUTANDRUN { // dedup_estimated_library_size:], BAM] //ch_samtools_bam | view ch_samtools_bai | view ch_bedgraph = Channel.empty() ch_bigwig = Channel.empty() if(params.run_peak_calling) { Loading Loading
workflows/cutandrun.nf +3 −3 Original line number Diff line number Diff line Loading @@ -201,8 +201,6 @@ workflow CUTANDRUN { } .set { ch_fastq } } // INPUT_CHECK.out.reads | view /* * MODULE: Concatenate FastQ files from same sample if required Loading Loading @@ -279,7 +277,7 @@ workflow CUTANDRUN { } } //EXAMPLE CHANNEL STRUCT: [[id:h3k27me3_R1, group:h3k27me3, replicate:1, single_end:false], [BAM]] ch_samtools_bam | view // ch_samtools_bam | view /* * SUBWORKFLOW: Filter reads based on quality metrics Loading Loading @@ -391,6 +389,8 @@ workflow CUTANDRUN { // dedup_estimated_library_size:], BAM] //ch_samtools_bam | view ch_samtools_bai | view ch_bedgraph = Channel.empty() ch_bigwig = Channel.empty() if(params.run_peak_calling) { Loading
