Loading modules.json 0 → 100644 +56 −0 Original line number Diff line number Diff line { "name": "nf-core/cutandrun", "homePage": "https://github.com/nf-core/cutandrun", "repos": { "nf-core/modules": { "bedtools/bamtobed": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bedtools/genomecov": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bedtools/intersect": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bedtools/merge": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bedtools/sort": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bowtie2/align": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bowtie2/build": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "cat/fastq": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "custom/getchromsizes": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "deeptools/computematrix": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "deeptools/plotheatmap": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "fastqc": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "gunzip": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "macs2/callpeak": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "picard/markduplicates": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "samtools/flagstat": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" } } } } No newline at end of file modules/nf-core/modules/bedtools/bamtobed/meta.yml +31 −31 Original line number Diff line number Diff line Loading @@ -8,7 +8,7 @@ tools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/complement.html licence: ['MIT'] licence: ["MIT"] input: - meta: type: map Loading modules/nf-core/modules/bedtools/genomecov/meta.yml +44 −44 Original line number Diff line number Diff line Loading @@ -9,7 +9,7 @@ tools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/genomecov.html licence: ['MIT'] licence: ["MIT"] input: - meta: type: map Loading modules/nf-core/modules/bedtools/intersect/meta.yml +40 −40 Original line number Diff line number Diff line Loading @@ -8,7 +8,7 @@ tools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html licence: ['MIT'] licence: ["MIT"] input: - meta: type: map Loading modules/nf-core/modules/bedtools/merge/meta.yml +32 −32 Original line number Diff line number Diff line Loading @@ -8,7 +8,7 @@ tools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/merge.html licence: ['MIT'] licence: ["MIT"] input: - meta: type: map Loading Loading
modules.json 0 → 100644 +56 −0 Original line number Diff line number Diff line { "name": "nf-core/cutandrun", "homePage": "https://github.com/nf-core/cutandrun", "repos": { "nf-core/modules": { "bedtools/bamtobed": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bedtools/genomecov": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bedtools/intersect": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bedtools/merge": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bedtools/sort": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bowtie2/align": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "bowtie2/build": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "cat/fastq": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "custom/getchromsizes": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "deeptools/computematrix": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "deeptools/plotheatmap": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "fastqc": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "gunzip": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "macs2/callpeak": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "picard/markduplicates": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "samtools/flagstat": { "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" } } } } No newline at end of file
modules/nf-core/modules/bedtools/bamtobed/meta.yml +31 −31 Original line number Diff line number Diff line Loading @@ -8,7 +8,7 @@ tools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/complement.html licence: ['MIT'] licence: ["MIT"] input: - meta: type: map Loading
modules/nf-core/modules/bedtools/genomecov/meta.yml +44 −44 Original line number Diff line number Diff line Loading @@ -9,7 +9,7 @@ tools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/genomecov.html licence: ['MIT'] licence: ["MIT"] input: - meta: type: map Loading
modules/nf-core/modules/bedtools/intersect/meta.yml +40 −40 Original line number Diff line number Diff line Loading @@ -8,7 +8,7 @@ tools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html licence: ['MIT'] licence: ["MIT"] input: - meta: type: map Loading
modules/nf-core/modules/bedtools/merge/meta.yml +32 −32 Original line number Diff line number Diff line Loading @@ -8,7 +8,7 @@ tools: description: | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. documentation: https://bedtools.readthedocs.io/en/latest/content/tools/merge.html licence: ['MIT'] licence: ["MIT"] input: - meta: type: map Loading
