Commit 352c8242 authored by Chris Cheshire's avatar Chris Cheshire
Browse files

Fixed filtering and unligned tests

parent d4f0d758

tests/test_verify_output_only_filtering.yml

+1 −1
Original line number Diff line number Diff line 
- name: test_verify_output_only_align

- name: verify_output_only_filtering

  command: nextflow run main.nf -profile docker,test --only_filtering true --skip_fastqc true --skip_removeduplicates true -c tests/config/nextflow.config

  tags:

    - verify_output

tests/test_verify_output_save_unaligned.yml

+4 −4
Original line number Diff line number Diff line
@@ -5,7 +5,7 @@ 
    - verify_output_align

    - verify_output_align_save_unaligned

  files:

    - path: results/02_alignment/bowtie2/target/h3k27me3_R1.target.unmapped_1.fastq.gz

    - path: results/02_alignment/bowtie2/target/igg_R1.target.unmapped_2.fastq.gz

    - path: results/02_alignment/bowtie2/target/h3k27me3_R1.target.unmapped_1.fastq.gz

    - path: results/02_alignment/bowtie2/target/igg_R1.target.unmapped_2.fastq.gz
 
 No newline at end of file
 
    - path: results/02_alignment/bowtie2/target/unmapped/h3k27me3_R1.target.unmapped_1.fastq.gz

    - path: results/02_alignment/bowtie2/target/unmapped/igg_R1.target.unmapped_2.fastq.gz

    - path: results/02_alignment/bowtie2/target/unmapped/h3k27me3_R1.target.unmapped_1.fastq.gz

    - path: results/02_alignment/bowtie2/target/unmapped/igg_R1.target.unmapped_2.fastq.gz
 
 No newline at end of file

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