Commit 2644e52d authored by Tamara Hodgetts's avatar Tamara Hodgetts
Browse files

branching on new is_control metadata variable

parent f922eb2a

subworkflows/nf-core/prepare_peakcalling.nf

+2 −2
Original line number Diff line number Diff line
@@ -98,8 +98,8 @@ workflow PREPARE_PEAKCALLING { 
        * CHANNEL: Split files based on igg or not

        */

        ch_bam_bai.branch { it ->

            target: it[0].group != "igg"

            control: it[0].group == "igg"

            target: it[0].is_control != 1

            control: it[0].is_control == 1

        }

        .set { ch_bam_bai_split }

workflows/cutandrun.nf

+0 −2
Original line number Diff line number Diff line
@@ -389,8 +389,6 @@ workflow CUTANDRUN { 
    // dedup_estimated_library_size:], BAM]

    //ch_samtools_bam | view



    ch_samtools_bai | view



    ch_bedgraph = Channel.empty()

    ch_bigwig   = Channel.empty()

    if(params.run_peak_calling) {

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