Commit e74c273d authored by Chaos's avatar Chaos
Browse files

fix a bug in merging bam files

parent c69dc65b

hic_local.sh

+2 −2
Changes for hic_local.sh: 2 added lines, 2 removed lines.
Original line number Diff line number Diff line
@@ -215,7 +215,7 @@ do 
		lib_stat_m=${lib_prefix}_hists.m

		lib_hic=${lib_prefix}.hic



		if [ ! -e $lib_sam ];then

		if [ ! -e $lib_bam ];then

			$samtools_cmd \

				merge \

					-c \
@@ -226,7 +226,7 @@ do 
					${split_dir}/${lib}*.bam

		fi

	

		if [ ! -e $lib_dedup_sam ];then

		if [ ! -e $lib_dedup_txt ];then

			$samtools_cmd \

				view \

					-@ $thread_str \

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