fix a bug in bam file naming (8554c726) · Commits · Chaos / chaos.juicer

hic_local.sh

+2 −2

Changes for hic_local.sh: 2 added lines, 2 removed lines.
Original line number	Diff line number	Diff line
		@@ -31,8 +31,8 @@ do

		read1_file=${fastq_dir}/${sample}_read1.${fastq_suffix}
		read2_file=${fastq_dir}/${sample}_read2.${fastq_suffix}
		split_prefix=${split_dir}/${sample}.${fastq_suffix}
		out_prefix=${out_dir}/${sample}.${fastq_suffix}
		split_prefix=${split_dir}/${sample}
		out_prefix=${out_dir}/${sample}
		res_file=${split_prefix}_norm.txt.res.txt
		linecount_file=${split_prefix}_linecount.txt