Change to juicer_tools (77e3baf7) · Commits · Chaos / chaos.juicer

CPU/common/juicer_postprocessing.sh

+2 −2

Changes for CPU/common/juicer_postprocessing.sh: 2 added lines, 2 removed lines.
Original line number	Diff line number	Diff line
		@@ -39,7 +39,7 @@ printHelpAndExit() {
		#set defaults
		genomeID="hg19"
		hic_file_path="$(pwd)/aligned/inter_30.hic"
		juiceboxpath="/opt/juicer/scripts/juicebox"
		juiceboxpath="/opt/juicer/scripts/juicer_tools"
		bed_file_dir="/opt/juicer/references/motif"

		while getopts "h:g:j:i:m:" opt; do
		@@ -55,7 +55,7 @@ done

		## Check that juicebox exists
		if [ ! -e "${juiceboxpath}" ]; then
		echo "***! Can't find juicebox in ${juiceboxpath}";
		echo "***! Can't find juicer_tools in ${juiceboxpath}";
		exit 100;
		fi