Update and rename juicebox to juicer_tools (022a679e) · Commits · Chaos / chaos.juicer

CPU/common/juicebox→CPU/common/juicer_tools

+4 −4

Changes for CPU/common/juicer_tools: 4 added lines, 4 removed lines.
Original line number	Diff line number	Diff line
		@@ -24,7 +24,7 @@
		if [ "$CALLEDBY" = "AWS" ]
		then
		echo "AWS"
		java -Djava.io.tmpdir=/opt/juicer/tmp -Djava.awt.headless=true -Djava.library.path=`dirname $0`/lib64 -Xmx32000m -Xms8000m -jar `dirname $0`/juicebox_tools.7.0.jar $*
		java -Djava.io.tmpdir=/opt/juicer/tmp -Djava.awt.headless=true -Djava.library.path=`dirname $0`/lib64 -Xmx32000m -Xms8000m -jar `dirname $0`/juicer_tools.7.0.jar $*
		elif [ "$CALLEDBY" = "UGER" ]
		then
		echo "UGER"
		@@ -32,10 +32,10 @@ then
		elif [ "$CALLEDBY" = "SLURM" ]
		then
		echo "SLURM"
		java -Djava.awt.headless=true -Djava.library.path=`dirname $0`/lib64 -Xmx16000m -Xms16000m -Xgcthreads1 -jar `dirname $0`/juicebox_tools.7.5.jar $*
		java -Djava.awt.headless=true -Djava.library.path=`dirname $0`/lib64 -Xmx16000m -Xms16000m -Xgcthreads1 -jar `dirname $0`/juicer_tools.7.5.jar $*
		elif [ "$CALLEDBY" = "LSF" ]
		then
		java -Djava.awt.headless=true -Djava.library.path=`dirname $0`/lib64 -Xmx16000m -Xms16000m -Xgcthreads1 -jar `dirname $0`/juicebox_tools.7.0.jar $*
		java -Djava.awt.headless=true -Djava.library.path=`dirname $0`/lib64 -Xmx16000m -Xms16000m -Xgcthreads1 -jar `dirname $0`/juicer_tools.7.0.jar $*
		else # default, don't use temp directory or gpus, use CUDA 7.0
		java -Djava.awt.headless=true -Xmx16000m -jar `dirname $0`/juicebox_tools.7.0.jar $*
		java -Djava.awt.headless=true -Xmx16000m -jar `dirname $0`/juicer_tools.7.0.jar $*
		fi