Loading hic_local.sh +2 −2 Original line number Diff line number Diff line Loading @@ -90,8 +90,8 @@ do rep=$(echo $sample | sed 's/_part[0-9]*//g' | sed 's/_t[0-9]*//g') lib=$(echo $rep | sed 's/_rep[0-9]*//g') rep_bam=${split_dir}/${rep}.bam rep_prefix=${out_dir}/${rep} rep_bam=${rep_prefix}.bam rep_dedup_sam=${rep_prefix}_dedup.sam rep_dedup_txt=${rep_prefix}_dedup.txt rep_dedup_index_txt=${rep_prefix}_dedup_index.txt Loading Loading @@ -204,8 +204,8 @@ do if [[ ! $rep = $lib ]] && [[ $rep_hic_num > 1 ]];then lib_bam=${split_dir}/${lib}.bam lib_prefix=${out_dir}/${lib} lib_bam=${lib_prefix}.bam lib_dedup_sam=${lib_prefix}_dedup.sam lib_dedup_txt=${lib_prefix}_dedup.txt lib_dedup_index_txt=${lib_prefix}_dedup_index.txt Loading Loading
hic_local.sh +2 −2 Original line number Diff line number Diff line Loading @@ -90,8 +90,8 @@ do rep=$(echo $sample | sed 's/_part[0-9]*//g' | sed 's/_t[0-9]*//g') lib=$(echo $rep | sed 's/_rep[0-9]*//g') rep_bam=${split_dir}/${rep}.bam rep_prefix=${out_dir}/${rep} rep_bam=${rep_prefix}.bam rep_dedup_sam=${rep_prefix}_dedup.sam rep_dedup_txt=${rep_prefix}_dedup.txt rep_dedup_index_txt=${rep_prefix}_dedup_index.txt Loading Loading @@ -204,8 +204,8 @@ do if [[ ! $rep = $lib ]] && [[ $rep_hic_num > 1 ]];then lib_bam=${split_dir}/${lib}.bam lib_prefix=${out_dir}/${lib} lib_bam=${lib_prefix}.bam lib_dedup_sam=${lib_prefix}_dedup.sam lib_dedup_txt=${lib_prefix}_dedup.txt lib_dedup_index_txt=${lib_prefix}_dedup_index.txt Loading
