Loading hic_local.sh +2 −2 Original line number Diff line number Diff line Loading @@ -90,7 +90,7 @@ do rep=$(echo $sample | sed 's/_part[0-9]*//g' | sed 's/_t[0-9]*//g') lib=$(echo $rep | sed 's/_rep[0-9]*//g') rep_sam=${split_dir}/${rep}.sam rep_bam=${split_dir}/${rep}.bam rep_prefix=${out_dir}/${rep} rep_dedup_sam=${rep_prefix}_dedup.sam rep_dedup_txt=${rep_prefix}_dedup.txt Loading Loading @@ -204,7 +204,7 @@ do if [[ ! $rep = $lib ]] && [[ $rep_hic_num > 1 ]];then lib_sam=${split_dir}/${lib}.sam lib_bam=${split_dir}/${lib}.bam lib_prefix=${out_dir}/${lib} lib_dedup_sam=${lib_prefix}_dedup.sam lib_dedup_txt=${lib_prefix}_dedup.txt Loading Loading
hic_local.sh +2 −2 Original line number Diff line number Diff line Loading @@ -90,7 +90,7 @@ do rep=$(echo $sample | sed 's/_part[0-9]*//g' | sed 's/_t[0-9]*//g') lib=$(echo $rep | sed 's/_rep[0-9]*//g') rep_sam=${split_dir}/${rep}.sam rep_bam=${split_dir}/${rep}.bam rep_prefix=${out_dir}/${rep} rep_dedup_sam=${rep_prefix}_dedup.sam rep_dedup_txt=${rep_prefix}_dedup.txt Loading Loading @@ -204,7 +204,7 @@ do if [[ ! $rep = $lib ]] && [[ $rep_hic_num > 1 ]];then lib_sam=${split_dir}/${lib}.sam lib_bam=${split_dir}/${lib}.bam lib_prefix=${out_dir}/${lib} lib_dedup_sam=${lib_prefix}_dedup.sam lib_dedup_txt=${lib_prefix}_dedup.txt Loading
