more updates around qc (226ac586) · Commits · Chaos / chaos.juicer

SLURM/scripts/juicer.sh

+4 −2

Changes for SLURM/scripts/juicer.sh: 4 added lines, 2 removed lines.
Original line number	Diff line number	Diff line
		@@ -1591,7 +1591,9 @@ then
		${juiceDir}/scripts/juicer_arrowhead.sh -j ${juiceDir}/scripts/juicer_tools -i $outputdir/inter_30.hic
		date;
		ARROWS`
		dependarrows="${dependhiccups}:$jid"
		dependarrows="#SBATCH -d ${dependhiccups}:$jid"
		else
		dependarrows=""
		fi

		if [ "$qc_apa" = 1 ]
		@@ -1626,7 +1628,7 @@ jid=`sbatch <<- FINCLN1 \| egrep -o -e "\b[0-9]+$"
		#SBATCH -c 1
		#SBATCH --ntasks=1
		#SBATCH -J "${groupname}_prep_done"
		#SBATCH -d $dependarrows
		$dependarrows
		$userstring

		date