Commit a15e9e96 authored by Neva C. Durand's avatar Neva C. Durand
Browse files

do not run hiccups or arrowhead if in qc mode

parent 7ff940ce
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+7 −0
Changes for SLURM/scripts/juicer.sh: 7 added lines, 0 removed lines.
Original line number Diff line number Diff line
@@ -1533,6 +1533,8 @@ then
    then
	sbatch_req="#SBATCH --gres=gpu:kepler:1"
    fi
    if [ "$qc" != 1 ]
    then
	jid=`sbatch <<- HICCUPS | egrep -o -e "\b[0-9]+$"
	#!/bin/bash -l
	#SBATCH -p $queue
@@ -1560,10 +1562,13 @@ then
	date
HICCUPS`
	dependhiccups="afterok:$jid"
    fi
else
    dependhiccups="afterok"
fi

if [ "$qc" != 1 ]
then
    jid=`sbatch <<- ARROWS | egrep -o -e "\b[0-9]+$"
	#!/bin/bash -l
	#SBATCH -p $queue
@@ -1587,6 +1592,8 @@ jid=`sbatch <<- ARROWS | egrep -o -e "\b[0-9]+$"
	date;
ARROWS`
dependarrows="${dependhiccups}:$jid"
fi

if [ "$qc_apa" = 1 ]
then
    jid=`sbatch <<- QC | egrep -o -e "\b[0-9]+$"