* Added DNAse mode; specify the restriction site as "none" to enable
* Added exclude fragment flag; use "-x" to run Juicer without creating fragment-delimited maps (this saves 8x space and a lot of time)
* Collisions (more than two loci in one read) are now determined and outputted
* Added another stage to relaunch at, and updated documentation to make this mode more clear
* Added diploid Hi-C creation scripts
* Added new flags for easier portability to LSF from AWS/OpenLava
* Updated documentation; added version information to output