manifest: update HALs ported to <zephyr/...> prefix

The following HALs contain code that makes use of Zephyr headers, so
they have been updated with the <zephyr/...> prefix:

- Altera
- NXP
- STM32
- TI

Signed-off-by: Gerard Marull-Paretas <gerard.marull@nordicsemi.no>