Added spellcheck utility to documentation build (fc9eebb9) · Commits · 郑智淋 / lammps

doc/.gitignore

+1 −0

Original line number	Diff line number	Diff line
		/html
		/spelling
		/LAMMPS.epub
		/LAMMPS.mobi
		/Manual.pdf

doc/Makefile

+16 −1

Original line number	Diff line number	Diff line
		@@ -22,7 +22,7 @@ endif
		SOURCES=$(wildcard src/*.txt)
		OBJECTS=$(SOURCES:src/%.txt=$(RSTDIR)/%.rst)

		.PHONY: help clean-all clean epub html pdf old venv
		.PHONY: help clean-all clean epub html pdf old venv spelling

		# ------------------------------------------

		@@ -44,6 +44,10 @@ clean-all:

		clean:
		rm -rf $(RSTDIR) html
		rm -rf spelling

		clean-spelling:
		rm -rf spelling

		html: $(OBJECTS)
		@(\
		@@ -64,6 +68,17 @@ html: $(OBJECTS)
		@rm -rf html/USER//.[sg]*
		@echo "Build finished. The HTML pages are in doc/html."

		spelling: $(OBJECTS) utils/sphinx-config/false_positives.txt
		@(\
		. $(VENV)/bin/activate ;\
		pip install sphinxcontrib-spelling ;\
		cp -r src/* $(RSTDIR)/ ;\
		cp utils/sphinx-config/false_positives.txt $(RSTDIR)/ ;\
		sphinx-build -b spelling -c utils/sphinx-config -d $(BUILDDIR)/doctrees $(RSTDIR) spelling ;\
		deactivate ;\
		)
		@echo "Spell check finished."

		epub: $(OBJECTS)
		@mkdir -p epub
		@rm -f LAMMPS.epub

doc/utils/sphinx-config/conf.py

+8 −1

Original line number	Diff line number	Diff line
		@@ -299,4 +299,11 @@ more information about the code and its uses.

		epub_author = 'The LAMMPS Developers'


		# configure spelling extension if present
		import importlib.util
		spelling_spec = importlib.util.find_spec("sphinxcontrib.spelling")
		if spelling_spec:
		extensions.append('sphinxcontrib.spelling')

		spelling_lang='en_US'
		spelling_word_list_filename='false_positives.txt'

doc/utils/sphinx-config/false_positives.txt

0 → 100644

+2183 −0

Original line number	Diff line number	Diff line
		aa
		aat
		abc
		abf
		absTol
		Acc
		Accelrys
		acceptor
		Acceptor
		acceptors
		accomodate
		accuracies
		ach
		achived
		achives
		ackland
		Ackland
		acolor
		acos
		Acta
		actinide
		adaptation
		addforce
		addtorque
		Adhikari
		adiam
		Adjiman
		adof
		adp
		Adri
		adusting
		advect
		advection
		advects
		afer
		affine
		Afshar
		agilio
		Agilio
		agni
		Ai
		Aidan
		aij
		airebo
		Aj
		ajaramil
		akohlmey
		Aktulga
		al
		alain
		Alain
		alat
		Albe
		alchemical
		AlCu
		Alderton
		Alejandre
		alessandro
		Alessandro
		aliceblue
		allocaters
		allosws
		AlO
		alond
		Alonso
		amap
		Amatrix
		Amit
		amu
		Amzallag
		Andzelm
		Ang
		angmom
		angmomx
		angmomy
		angmomz
		Angs
		anharmonic
		anharmonicity
		aniso
		anisotropic
		ansi
		antiquewhite
		Antisymmetrized
		antisymmetry
		Antonelli
		aperiodic
		api
		Appl
		Apu
		arccos
		arcsin
		arg
		args
		artefacts
		Arun
		asin
		Askari
		askoose
		asphere
		ASPHERE
		aspherical
		Asq
		assinged
		associdate
		Asta
		Astart
		Astop
		asub
		asubrama
		Asumming
		atan
		atc
		AtC
		ATC
		athomps
		atobody
		atomeye
		atomfile
		atomID
		atomistic
		atomt
		attogram
		attograms
		attrac
		Atw
		Atwater
		atwt
		augt
		AuO
		autocorrelation
		automagically
		Avalos
		avalue
		aveforce
		Avendano
		avi
		AVX
		awpmd
		AWPMD
		Axel
		Ay
		Ayton
		Az
		azimuthal
		ba
		Babadi
		backcolor
		backend
		Baczewski
		Bal
		balancer
		Balasubramanian
		Ballenegger
		Bammann
		Barashev
		barostat
		barostated
		barostating
		barostatted
		barostatting
		Barostatting
		barosttating
		Barrat
		Bartels
		barycenter
		barye
		Bashford
		Baskes
		Batra
		Bayly
		bb
		bcc
		bcolor
		bdiam
		Beckman
		Belak
		Bellott
		benchmarking
		Bennet
		Berardi
		Beraun
		berendsen
		Berendsen
		berger
		Berkowitz
		berlin
		Berne
		Beutler
		bgq
		Bh
		biaxial
		Biersack
		bigint
		bilayer
		bilayers
		binsize
		binstyle
		biomolecular
		biomolecule
		Biomolecules
		Biophys
		Biosym
		bisectioning
		bispectrum
		Bispectrum
		bitmapped
		bitrate
		bitrates
		Bitzek
		Blaise
		blanchedalmond
		blocksize
		blueviolet
		bn
		bni
		bodyflag
		bodystyle
		Bogaerts
		Bogusz
		Bohrs
		bondchk
		bondings
		bondmax
		bondtype
		Bonet
		boolean
		Boresch
		Botero
		Botu
		Bouguet
		bount
		boxcolor
		bpclermont
		br
		Branicio
		brennan
		Brilliantov
		Broadwell
		brownian
		brownw
		Bryantsev
		btype
		buckPlusAttr
		bugfixes
		Bulatov
		burlywood
		Bussi
		Buyl
		Bybee
		bz
		cadetblue
		calcalation
		caltech
		Caltech
		Campana
		Cao
		Capolungo
		Caro
		cartesian
		Cates
		cbecker
		CCu
		cd
		cdeam
		cdennist
		cdof
		ceil
		Ceil
		centre
		centro
		centroid
		Centroid
		centrosymmetry
		Cerda
		ceriotti
		Ceriotti
		Cerutti
		cfg
		CFG
		cfile
		CFL
		cgdna
		CGDNA
		cgs
		Chalopin
		Champaign
		charmm
		CHARMM
		checkmark
		checkqeq
		Cheng
		Chenoweth
		chiral
		chirality
		Cho
		Christoph
		Chu
		chunkID
		Ciccotti
		Cieplak
		Cii
		Cij
		cis
		civ
		clearstore
		Clebsch
		Clermont
		clo
		Clovertown
		cmap
		Cmax
		cmdlist
		Cmin
		cmm
		CMM
		cn
		cN
		Cn
		cna
		cnr
		coaxstk
		codebase
		coeff
		Coeff
		coeffs
		Coeffs
		Colberg
		coleman
		Colliex
		collinear
		colvars
		Colvars
		COLVARS
		comID
		Commun
		complier
		compressibility
		compressive
		Comput
		computable
		compute
		concetric
		cond
		Condens
		config
		configfile
		configurational
		conformational
		conjuction
		consiting
		continously
		Contrib
		coord
		Coord
		CoordN
		coords
		coprocessor
		coprocessors
		coreshell
		cornflowerblue
		cornsilk
		correlator
		cosineshifted
		cossq
		costheta
		Couette
		coul
		coulombic
		Coulombic
		Coulombics
		Coulommbic
		Courant
		covalent
		covalently
		covariance
		cpp
		cpu
		createatoms
		createAtoms
		Critchley
		crossterm
		crossterms
		Crozier
		crystallisation
		Crystallogr
		Csanyi
		csh
		cshrc
		CSiC
		csld
		cstyle
		csvr
		Ctypes
		cuda
		Cuda
		CUDA
		CuH
		cuthi
		cutinner
		cutlo
		cutmax
		cutoffA
		cutoffC
		cuu
		cv
		Cv
		Cval
		cvar
		cvff
		cwiggle
		Cygwin
		Cyrot
		cyrstals
		Daivis
		Dammak
		dampflag
		Darden
		darkblue
		darkcyan
		darkgoldenrod
		darkgray
		darkgreen
		darkkhaki
		darkmagenta
		darkolivegreen
		darkorange
		darkorchid
		darkred
		darksalmon
		darkseagreen
		darkslateblue
		darkslategray
		darkturquoise
		darkviolet
		Das
		Dasgupta
		datafile
		datums
		Davidchack
		Daw
		dcd
		de
		dE
		De
		debye
		Debye
		decompositions
		deeppink
		deepskyblue
		defauls
		defgrad
		deformable
		degress
		del
		Dellago
		delocalization
		delocalized
		delr
		deltaHf
		Dendrimer
		dendtritic
		Denniston
		dephase
		dephasing
		depositied
		dequidt
		Dequidt
		der
		Derjagin
		Derlet
		Deserno
		Destree
		detils
		Devanathan
		Devemy
		deviatoric
		Devine
		df
		dfftw
		DFT
		dia
		diag
		diagonalized
		Diallo
		diel
		differentiable
		diffusivity
		dihedral
		dihedrals
		Dihedrals
		dihydride
		Dij
		dimdim
		dimensionality
		dimgray
		dipolar
		dir
		Direc
		dirs
		discoverable
		discretization
		discretized
		disp
		displacment
		dissipative
		Dissipative
		distro
		divdes
		dl
		dlambda
		DLAMMPS
		dlopen
		dm
		dmax
		Dmax
		Dodds
		dodgerblue
		dof
		Donadio
		dotc
		Doty
		Doye
		dpd
		DPD
		dpdTheta
		DPhil
		dr
		dR
		dragforce
		Drautz
		dreiding
		Dreiding
		drfourth
		drho
		drsquared
		drude
		Drude
		DRUDE
		dsf
		dsmc
		dt
		du
		dU
		Dudarev
		Duin
		Dullweber
		Dunbrack
		Dunweg
		Dupont
		dUs
		dV
		dvector
		dVx
		dW
		dx
		dy
		dyne
		dynes
		Dyre
		Eaa
		Eaat
		Eacn
		eam
		eangle
		eatom
		Eba
		ebond
		ebt
		Ec
		ecoul
		ecp
		edihed
		edim
		edip
		edu
		ee
		Eebt
		eFF
		efield
		eflux
		Eggebrecht
		ehanced
		ehex
		eHEX
		Ei
		Eigensolve
		Eike
		eim
		eimp
		Eindhoven
		Ejtehadi
		El
		elaplong
		Electroneg
		electronegative
		electronegativity
		Eleftheriou
		ElementN
		elif
		Elj
		Ellad
		ellipsoidflag
		elong
		elt
		emacs
		Embt
		emi
		emol
		eN
		energetics
		energyCorr
		eng
		Engility
		engilitycorp
		engrot
		engtrans
		engvib
		enthalpy
		envoke
		eos
		epair
		epcc
		Epp
		Epq
		eps
		Epton
		eq
		eqch
		Eqp
		Eqq
		Eqs
		equi
		equil
		equilibrate
		equilibrated
		equilibrating
		equilibration
		Equilibria
		equilibribum
		equilization
		eradius
		erate
		erc
		erfc
		Erhart
		erorate
		erose
		erotate
		Ertas
		ervel
		esu
		esub
		et
		etag
		etap
		ethernet
		etol
		etot
		etotal
		Europhys
		ev
		eV
		evalue
		Evanseck
		evdwl
		Everaers
		evirials
		ewald
		Ewald
		excitations
		excv
		exe
		executables
		extrema
		ey
		ez
		factorizable
		factorizations
		Faken
		Farago
		Fasolino
		Fava
		fbMC
		Fc
		fcc
		fcm
		Fd
		fdotr
		fdt
		Fehlberg
		Fellinger
		femtosecond
		femtoseconds
		fene
		Fennell
		fep
		FEP
		fermi
		Fermionic
		Ferrand
		fexternal
		Fexternal
		ffield
		ffmpeg
		FFmpeg
		ffplay
		fft
		fftbench
		fftw
		fhg
		Fi
		figshare
		Fij
		filenname
		fileper
		Fincham
		Finchham
		Finnis
		Fiorin
		fixID
		fj
		Fji
		flagfld
		flagHI
		flaglog
		flagN
		flagVF
		fld
		floralwhite
		flv
		fmackay
		fmag
		fmass
		fmsec
		fN
		Fn
		fname
		fno
		foces
		Fock
		Fogarty
		Foiles
		fopenmp
		forcefield
		forestgreen
		formulae
		Fortran
		fourier
		fp
		fphi
		fPIC
		fplo
		Fqq
		Fraige
		framerate
		Fraunhofer
		Freitas
		Frenkel
		Friedrichs
		frontend
		Frontends
		fs
		fstyle
		ftol
		fugacity
		Fumi
		func
		funcs
		functionals
		funroll
		fx
		fy
		fz
		gainsboro
		gammaFactor
		ganzenmueller
		Ganzenmuller
		Gao
		Gathert
		gauss
		gaussian
		Gaussians
		Gavhane
		gayberne
		gcc
		gcmc
		georg
		Georg
		Germann
		gerolf
		Gerolf
		gettimeofday
		gewald
		Gflop
		gfortran
		ghostwhite
		Giacomo
		gif
		gifsicle
		gjf
		gjwagne
		gl
		gld
		gle
		Glotzer
		gmail
		gmake
		gmask
		Gmask
		Gordan
		gpu
		gpus
		graining
		Graining
		Grama
		Greathouse
		greenyellow
		Greffet
		grem
		gREM
		Grest
		Grigera
		grmask
		Grmask
		Gronbech
		Grueneisen
		gstyle
		GTL
		gui
		guidline
		Gunsteren
		Gunzenmuller
		Guo
		gwald
		gz
		gzipped
		Haak
		Hafskjold
		Halperin
		haptic
		Harpertown
		Hasan
		Hayoun
		Hayre
		hbond
		hcp
		Hebenstreit
		Heenen
		Hendrik
		Henin
		Henkelman
		henrich
		Henrich
		hertzian
		hexahedrons
		hexatic
		hexorder
		Heyes
		Hibbs
		Higdon
		histo
		histogrammed
		histogramming
		hmaktulga
		Hofling
		Holian
		Holm
		Homebrew
		hotpink
		howto
		Howto
		Hoyt
		hstyle
		html
		hu
		hugoniostat
		Hugoniostat
		Hugoniot
		Hura
		hwloc
		hydrogens
		hydrostatic
		hydrostatically
		hyperspherical
		hyperthreaded
		ibm
		icc
		icosohedral
		ieni
		ifdefs
		iff
		ifort
		ij
		ijkl
		ik
		Ikeshoji
		ilmenau
		Ilmenau
		Ilya
		im
		Im
		imageint
		Imageint
		Imagemagick
		imd
		Impey
		impropers
		Impropers
		includelink
		incompressible
		indenter
		indenters
		indianred
		inertiax
		inertiay
		inertiaz
		inhomogeneities
		inhomogeneous
		init
		initializations
		inregion
		integrators
		Integrators
		intel
		intelmpi
		interal
		interatomic
		Interatomic
		intermolecular
		intra
		intramolecular
		ints
		inv
		invariants
		inversed
		ionocovalent
		iparam
		ipi
		ipp
		isenthalpic
		iso
		isoenergetic
		isoenthalpic
		isokinetic
		isomorphism
		isothermal
		isotropically
		isovolume
		iteratively
		Ith
		itype
		itypeN
		Ivector
		Iw
		ixcm
		ixx
		Ixx
		ixy
		Ixy
		ixz
		Ixz
		iy
		iycm
		iyy
		Iyy
		iyz
		Iyz
		iz
		izcm
		ized
		Izvekov
		izz
		Izz
		jagreat
		james
		Janssens
		Jaramillo
		jatempl
		jec
		Jeffers
		jewett
		Jewett
		Jiang
		Jiao
		jku
		Joannopoulos
		Jochim
		Jonsson
		Jorgensen
		jparam
		jpeg
		jpeglib
		jpg
		JPG
		jpl
		jtype
		jtypeN
		Julien
		Jx
		Jy
		Jz
		jzimmer
		Kadiri
		Kamberaj
		Kapfer
		Karlsruhe
		Karplus
		Karttunen
		kate
		Kaufmann
		kb
		kB
		kbit
		kbits
		kcal
		Kd
		ke
		KE
		keflag
		Keir
		Kelchner
		Kemper
		Keyes
		Khersonskii
		Khvostov
		Ki
		kim
		kk
		Kloss
		kmax
		Kmax
		knl
		Kohlmeyer
		kokkos
		Kollman
		konglt
		Kooser
		Kp
		Kraker
		Kraus
		Kremer
		kspace
		Kspace
		KSpace
		Kspring
		kT
		kth
		Kth
		Kub
		Kubo
		Kumar
		Kusters
		Kutta
		kx
		Ladd
		lamda
		lammps
		Lammps
		LAMMPS
		lammpsplot
		Lamoureux
		langevin
		Langevin
		Langston
		larentzos
		Larentzos
		Laroche
		lars
		latencies
		lavenderblush
		lawngreen
		lbl
		LBtype
		ld
		ldfftw
		ldg
		Leimkuhler
		lemonchiffon
		Lennard
		Lett
		Leuven
		libAtoms
		libdir
		libgpu
		libjpeg
		liblammps
		Liblammps
		liblink
		libmeam
		libmpi
		libmpich
		libpng
		libpoems
		librar
		libreax
		libs
		lightblue
		lightcoral
		lightcyan
		lightgoldenrodyellow
		lightgreen
		lightgrey
		lightpink
		lightsalmon
		lightseagreen
		lightskyblue
		lightslategray
		lightsteelblue
		lightyellow
		Likhtman
		limegreen
		lineflag
		lineforce
		linesearch
		linux
		Liouville
		Lisal
		Livermore
		lj
		lm
		lmp
		lmpptr
		lmpqst
		lmpsdata
		Lmpsdata
		lmptype
		ln
		localTemp
		localvectors
		logfile
		logfreq
		Lomdahl
		lookups
		Lookups
		Lorant
		lossy
		lps
		lrt
		lsfftw
		ltbbmalloc
		Lustig
		lx
		ly
		lz
		Mackay
		Mackrodt
		Madura
		Maginn
		mainboards
		makefile
		Makefile
		makefiles
		Makefiles
		makelist
		malloc
		Malolepsza
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		vectorization
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