Fix typos in tools folder

   """

   def get_C(self):

      """Calculates C from temp (if C is not set explicitely)."""

      """Calculates C from temp (if C is not set explicitly)."""

      rv = np.ndarray((self.nb, self.ns+1, self.ns+1), float)

      for b in range(0,self.nb):

#echo "  # This file was automatically generated by \"common/amber/amberparm2lt.sh\""

echo "  # The basic atom nomenclature and conventions are explained here:"

echo "  #   http://ambermd.org/antechamber/gaff.pdf"

echo "  # For reference, the original gaff.dat file and format documenation are here:"

echo "  # For reference, the original gaff.dat file and format documentation are here:"

echo "  #   http://ambermd.org/AmberTools-get.html"

echo "  #   http://ambermd.org/formats.html#parm.dat"

echo "  # ----------------------------------------------------------------------"

  # ----------------------------------------------------------------------

  # The basic atom nomenclature and conventions are explained here:

  #   http://ambermd.org/antechamber/gaff.pdf

  # For reference, the original gaff.dat file and format documenation are here:

  # For reference, the original gaff.dat file and format documentation are here:

  #   http://ambermd.org/AmberTools-get.html

  #   http://ambermd.org/formats.html#parm.dat

  # ----------------------------------------------------------------------

    # Parsing, and compiling is a multi-pass process.

    # Step 1: Read in the StaticObj (class) defintions, without checking

    # Step 1: Read in the StaticObj (class) definitions, without checking

    # whether or not the instance_children refer to valid StaticObj types.

    sys.stderr.write('parsing the class definitions...')

    static_tree_root.Parse(settings.lex)

 1.0  1   op      15.99940      O          2        sp2 aromatic in 5 membered ring 

 3.0 10   osh     15.99491      O          2        oxygen atom in terminal hydroxyl group on silicon

 1.0  1   osi     16.00000      O          2        siloxane oxygen

 3.0 10   oss     15.99491      O          2        oxygen atom betweem two silicons

 3.0 10   oss     15.99491      O          2        oxygen atom between two silicons

 2.0  5   oz      15.99940      O          2        ester oxygen in carbonate

 1.0  1   p       30.97380      P          4        general phosphorous atom

 1.0  1   p=      30.97380      P          5        phosphazene phosphorous atom