Commit 4251c70e authored by Axel Kohlmeyer's avatar Axel Kohlmeyer
Browse files

update list of false positives for spellchecking

parent 0bcb1bd3
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+460 −145
Original line number Diff line number Diff line
@@ -2,37 +2,38 @@ aa
aat
abc
abf
ABI
abo
Abramyan
absTol
Acc
Accelerys
Accelrys
acceptor
Acceptor
acceptors
accomodate
accuracies
ach
achived
achives
ackland
Ackland
acolor
acos
Acta
actinide
adaptation
addforce
Addington
addtorque
adf
Adhikari
adiam
adim
Adjiman
adof
adp
Adri
adusting
advect
advection
advects
afer
affine
Afshar
agilio
@@ -49,6 +50,7 @@ Aktulga
al
alain
Alain
Alamos
alat
Albe
alchemical
@@ -65,11 +67,17 @@ alond
Alonso
amap
Amatrix
amino
Amirjalayer
Amit
amu
Amzallag
analytical
Anders
Andzelm
Ang
anglegrad
angletangrad
angmom
angmomx
angmomy
@@ -79,12 +87,13 @@ anharmonic
anharmonicity
aniso
anisotropic
anisotropy
ansi
antiquewhite
Antisymmetrized
antisymmetry
anton
Antonelli
aperiodic
api
Appl
Apu
@@ -92,8 +101,8 @@ arccos
arcsin
arg
args
artefacts
Arun
arXiv
asin
Askari
askoose
@@ -101,8 +110,7 @@ asphere
ASPHERE
aspherical
Asq
assinged
associdate
assignee
Asta
Astart
Astop
@@ -114,12 +122,11 @@ atc
AtC
ATC
athomps
atobody
atm
atomeye
atomfile
atomID
atomistic
atomt
attogram
attograms
attrac
@@ -128,7 +135,6 @@ Atwater
atwt
augt
AuO
autocorrelation
automagically
Avalos
avalue
@@ -139,33 +145,36 @@ AVX
awpmd
AWPMD
Axel
Axilrod
Ay
Ayton
Az
Azevedo
azimuthal
Azuri
ba
Babadi
backcolor
backend
Baczewski
Bal
balancer
Balankura
Balasubramanian
Balatsky
Ballenegger
Bammann
Barashev
barostat
barostated
barostating
Barostats
barostatted
barostatting
Barostatting
barosttating
Barrat
Bartels
barycenter
barye
Bashford
bashrc
Baskes
Batra
Bayly
@@ -173,6 +182,7 @@ bb
bcc
bcolor
bdiam
bdw
Beckman
behaviour
Belak
@@ -187,12 +197,14 @@ berger
Berkowitz
berlin
Berne
Bertotti
Beutler
bgq
Bh
biaxial
Biersack
bigbig
bigint
Bij
bilayer
bilayers
binsize
@@ -205,6 +217,7 @@ Biosym
bisectioning
bispectrum
Bispectrum
bitbucket
bitmapped
bitrate
bitrates
@@ -215,53 +228,70 @@ blocksize
blueviolet
bn
bni
bo
Bochum
bocs
bodyflag
bodyforce
bodystyle
Bogaerts
Bogusz
Bohrs
Boltzman
bondchk
bondings
bondmax
bondtype
Bonet
Bonomi
boolean
boostostat
boostostatting
Boresch
Botero
Botu
Bouguet
bount
boxcolor
bpclermont
br
Branduardi
Branicio
brennan
Brilliantov
Broadwell
Broglie
brownian
brownw
Bryantsev
Btarget
btype
buckPlusAttr
bugfixes
Bulatov
Bureekaew
burlywood
Bussi
Buturigakkwaishi
Buyl
Bybee
bz
cadetblue
calibre
caltech
Caltech
Camilloni
Camiloni
Campana
Cao
Capolungo
Caro
cartesian
Caswell
Cates
Cavium
Cawkwell
cbecker
ccache
ccmake
ccNspecies
CCu
cd
cdeam
@@ -269,7 +299,6 @@ cdennist
cdof
ceil
Ceil
centre
centro
centroid
Centroid
@@ -285,20 +314,26 @@ CFL
cgdna
CGDNA
cgs
cgsdk
CGSDK
Chalopin
Champaign
charmm
charmmfsw
charmmfsh
charmm
CHARMM
charmmfsh
charmmfsw
Chaudhuri
checkbox
checkmark
checkqeq
chemistries
Chemnitz
Cheng
Chenoweth
chiral
chirality
Cho
chris
Christoph
Chu
chunkID
@@ -310,6 +345,7 @@ cis
civ
clearstore
Clebsch
clemson
Clermont
clo
Clovertown
@@ -325,6 +361,7 @@ cn
cN
Cn
cna
cnp
cnr
coaxstk
codebase
@@ -333,41 +370,41 @@ Coeff
CoefficientN
coeffs
Coeffs
Coker
Colberg
coleman
Colliex
collinear
collisional
Columic
colvars
Colvars
COLVARS
comID
Commun
complier
compressibility
compressive
Comput
computable
compute
concetric
concat
cond
Condens
conf
config
configfile
configurational
conformational
conjuction
consiting
continously
Contrib
coord
Coord
CoordN
coords
coprocessor
coprocessors
coreshell
cornflowerblue
cornsilk
corotate
corotational
correlator
cosineshifted
cossq
@@ -377,7 +414,6 @@ coul
coulombic
Coulombic
Coulombics
Coulommbic
Courant
covalent
covalently
@@ -386,17 +422,20 @@ cpp
cpu
createatoms
createAtoms
crespi
Crespi
Critchley
crossterm
crossterms
Crowson
Crozier
crystallisation
Crystallogr
Csanyi
csh
cshrc
CSiC
csld
cslib
CSlib
cstyle
csvr
Ctypes
@@ -404,6 +443,9 @@ cuda
Cuda
CUDA
CuH
Curk
customIDs
cutbond
cuthi
cutinner
cutlo
@@ -444,23 +486,26 @@ darkturquoise
darkviolet
Das
Dasgupta
dat
datafile
datums
Davidchack
Daw
dcd
dcub
Dcut
de
dE
De
debye
Debye
Decius
decompositions
decrementing
deeppink
deepskyblue
defauls
defgrad
deformable
degress
del
Dellago
delocalization
@@ -468,28 +513,33 @@ delocalized
delr
deltaHf
Dendrimer
dendtritic
dendritic
Denniston
dephase
dephasing
depositied
dequidt
Dequidt
der
derekt
Derjagin
Derlet
Deserno
Destree
detils
Devanathan
devel
Devemy
deviatoric
Devine
df
dfftw
DFT
dftb
dh
dhex
dia
diag
diagonalization
diagonalized
Diallo
diel
@@ -511,24 +561,26 @@ discoverable
discretization
discretized
disp
displacment
dissipative
Dissipative
distro
divdes
dl
dlambda
DLAMMPS
dll
dlopen
dm
dmax
Dmax
dmi
dnf
Dobson
Dodds
dodgerblue
dof
Donadio
dotc
Doty
doxygen
Doye
dpd
DPD
@@ -549,11 +601,13 @@ DRUDE
dsf
dsmc
dt
dtheta
du
dU
Dudarev
Duin
Dullweber
dumpfile
Dunbrack
Dunweg
Dupont
@@ -567,6 +621,7 @@ dy
dyne
dynes
Dyre
Dzyaloshinskii
Eaa
Eaat
Eacn
@@ -575,26 +630,35 @@ eangle
eatom
Eba
ebond
ebook
ebt
ec
Ec
ecoul
ecp
edgeIDs
edihed
edim
edip
edpd
eDPD
edu
ee
Eebt
ees
eFF
efield
eflux
eg
Eggebrecht
ehanced
ehex
eHEX
Ei
Eigen
Eigensolve
eij
Eij
Eijnden
Eike
eim
eimp
@@ -612,8 +676,13 @@ Elj
Ellad
ellipsoidflag
elong
Elsevier
Elsner
Elstner
elt
emacs
emax
Emax
Embt
emi
emol
@@ -626,16 +695,22 @@ engilitycorp
engrot
engtrans
engvib
enobonds
enthalpy
enums
envoke
eos
epair
epcc
epl
Epp
Epq
eps
Epton
epub
ePUB
eq
eqal
eqch
Eqp
Eqq
@@ -647,11 +722,11 @@ equilibrated
equilibrating
equilibration
Equilibria
equilibribum
equilization
eradius
erate
erc
erf
erfc
Erhart
erorate
@@ -659,11 +734,14 @@ erose
erotate
Ertas
ervel
Espanol
esu
esub
esw
et
etag
etap
ETarget
ethernet
etol
etot
@@ -682,14 +760,18 @@ excitations
excv
exe
executables
extep
extrema
exy
ey
ez
factorizable
factorizations
Fahrenberger
Faken
Farago
Fasolino
Fath
Fava
fbMC
Fc
@@ -712,6 +794,7 @@ Ferrand
fexternal
Fexternal
ffield
ffl
ffmpeg
FFmpeg
ffplay
@@ -720,13 +803,17 @@ fftbench
fftw
fhg
Fi
Fichthorn
Fickian
figshare
Fij
filelink
filename
filenames
Filename
filenames
Filenames
fileper
filesystem
Fincham
Finchham
Finnis
@@ -741,24 +828,31 @@ flagN
flagVF
fld
floralwhite
Florez
flv
fmackay
fmag
fmass
fmm
fmsec
fmx
fmy
fmz
fN
Fn
fname
fno
Fnudge
foces
Fock
Fogarty
Foiles
fopenmp
forcefield
forestgreen
formulae
Forschungszentrum
Fortran
Fosado
fourier
fp
fphi
@@ -767,19 +861,21 @@ fplo
Fqq
Fraige
framerate
Frauenheim
Fraunhofer
Freitas
Frenkel
Friedrichs
frontend
Frontends
fs
fsh
fstyle
fsw
ftol
fugacity
Fumi
func
funcs
functionalities
functionals
funroll
fx
@@ -797,8 +893,10 @@ ganzenmueller
Ganzenmuller
Gao
Gathert
Gaus
gauss
gaussian
gaussians
Gaussians
Gavhane
gayberne
@@ -823,11 +921,13 @@ gif
gifsicle
Gillan
Gingold
Gissinger
github
Github
gjf
gjwagne
gl
gladky
Gladky
gld
gle
globbing
@@ -837,11 +937,13 @@ gmail
gmake
gmask
Gmask
googlemail
Gordan
GPa
gpu
gpuID
gpus
gradV
graining
Graining
Grama
@@ -855,30 +957,36 @@ grem
gREM
Grest
Grigera
Grimme
grmask
Grmask
gromacs
Gromacs
gromos
Gronbech
Groot
groupbig
grp
Grueneisen
gsmooth
gstyle
GTL
Gubbins
Guericke
gui
guidline
Gumbsch
Gunsteren
Gunzenmuller
Guo
gwald
gw
gz
gzipped
Haak
Hafskjold
Halperin
Halver
Hamaker
Hamel
haptic
Hara
Harpertown
@@ -886,9 +994,12 @@ Harting
Hartree
Hartrees
Hasan
Haswell
Haugk
Hayoun
Hayre
hbcut
hbn
hbnewflag
hbond
hcp
@@ -901,7 +1012,6 @@ Henin
Henkelman
henrich
Henrich
heristics
Herrmann
Hertizian
hertzian
@@ -914,12 +1024,14 @@ HfO
hgrid
Hibbs
Higdon
Hijazi
Hilger
histo
histogrammed
histogramming
hmaktulga
hoc
Hochbruck
Hofling
Holian
Holm
@@ -934,27 +1046,32 @@ Hoyt
hstyle
html
hTST
https
hu
Hueckel
Huetter
Hugonio
hugoniostat
Hugoniostat
Hugoniot
Hura
hux
hwloc
hydrogens
hydrophobicity
hydrostatic
hydrostatically
Hynninen
Hyoungki
hyperdynamics
hyperradius
hyperspherical
hyperthreaded
Hyperthreading
Ibanez
ibar
ibm
icc
icosohedral
ico
icosahedral
idealgas
ideaology
IDR
ielement
ieni
@@ -969,6 +1086,7 @@ ik
Ikeshoji
ilmenau
Ilmenau
ilp
Ilya
im
Im
@@ -977,10 +1095,8 @@ Imageint
Imagemagick
imd
Impey
imporopers
impropers
Impropers
imroper
includelink
incompressible
incrementing
@@ -997,7 +1113,6 @@ init
initializations
InP
inregion
integrations
integrators
Integrators
intel
@@ -1006,10 +1121,11 @@ interal
interatomic
Interatomic
interconvert
intergation
interial
interlayer
intermolecular
interstitials
Intr
intra
intramolecular
ints
@@ -1020,9 +1136,11 @@ ionocovalent
iparam
ipi
ipp
IPv
IPython
Isele
isenthalpic
ish
iso
isodemic
isoenergetic
@@ -1038,6 +1156,7 @@ Ith
Itsets
itype
itypeN
iva
Ivector
Iw
ixcm
@@ -1063,11 +1182,13 @@ izz
Izz
Jacobsen
jagreat
Jalalvand
james
Janssens
Jaramillo
Jarzynski
jatempl
jcp
jea
jec
Jeffers
@@ -1079,10 +1200,12 @@ Jiao
jik
JIK
jku
jN
Joannopoulos
Jochim
Jonsson
Jorgensen
jp
jparam
jpeg
jpeglib
@@ -1092,7 +1215,11 @@ jpl
Jth
jtype
jtypeN
Juelich
Julien
junghans
Junghans
Jungnickel
Jupyter
Justo
Jusufi
@@ -1105,17 +1232,23 @@ Kalia
Kamberaj
Kapfer
Karlsruhe
Karniadakis
Karplus
Karttunen
kate
Katsnelson
Katsura
Kaufmann
Kawata
Kayser
kb
kB
kbit
kbits
kcal
kcl
Kd
KDevelop
ke
KE
Keblinski
@@ -1126,6 +1259,7 @@ Kelkar
Kemper
Keyes
Khersonskii
Khrapak
Khvostov
Ki
kim
@@ -1138,27 +1272,35 @@ kmax
Kmax
knl
Kohlmeyer
Kohn
kokkos
Kolafa
Kollman
kolmogorov
Kolmogorov
Kondor
konglt
Koning
Kooser
Koskinen
Koster
Kosztin
Kp
Kraker
Kraus
Kremer
Kress
Kronik
kspace
Kspace
KSpace
Kspring
kT
kTequil
kth
Kth
kTln
ktypeN
Kub
Kubo
Kumagai
@@ -1181,11 +1323,14 @@ Landron
langevin
Langevin
Langston
lanl
larentzos
Larentzos
Laroche
lars
latencies
Latour
latourr
lattce
Laupretre
lavenderblush
@@ -1197,9 +1342,11 @@ lcbop
ld
ldfftw
ldg
Lebold
Lechman
Lehoucq
Leimkuhler
Leite
leiu
lemonchiffon
Lenart
@@ -1208,24 +1355,37 @@ Lennard
Lenosky
Lett
Leuven
Leven
Lewy
lgvdw
Liang
libatc
libAtoms
libawpmd
libch
libcolvars
libdir
libdl
libfftw
libgcc
libgpu
libjpeg
liblammps
Liblammps
liblink
libmeam
libmessage
libmpi
libmpich
libplumed
libplumedKernel
libpng
libpoems
libqmmm
librar
libreax
libs
Lifshitz
ligand
lightblue
lightcoral
@@ -1242,6 +1402,7 @@ lightsteelblue
lightyellow
Likhtman
limegreen
linalg
Lindahl
lineflag
lineforce
@@ -1254,6 +1415,7 @@ Littmark
Liu
Livermore
lj
llammps
lm
lmp
lmpptr
@@ -1272,8 +1434,11 @@ lookups
Lookups
LoopVar
Lorant
lorenz
lossless
lossy
lps
lpsapi
lrt
lsfftw
ltbbmalloc
@@ -1281,17 +1446,23 @@ lubricateU
lucy
Lussetti
Lustig
lwsock
lx
ly
Lybrand
Lyulin
lz
Maaravi
Mackay
Mackrodt
macroparticle
Madura
Magda
Magdeburg
magelec
Maginn
magneton
mainboard
mainboards
makefile
Makefile
@@ -1303,6 +1474,7 @@ malloc
Malolepsza
Manby
Mandadapu
Mandelli
Manh
manifoldforce
Manolopoulos
@@ -1313,10 +1485,14 @@ Marrink
Marsaglia
Marseille
Martyna
Masaglia
Mashayak
Massimilliano
massless
masstotal
Masuhiro
Matchett
Materias
matlab
matplotlib
Mattox
@@ -1324,24 +1500,31 @@ Mattson
maxangle
maxbond
maxeval
maxfiles
Maxfoo
maxima
maxit
maxiter
maxsize
maxspecial
maxSteps
maxstrain
maxX
Mayergoyz
mbt
Mbytes
MBytes
mc
McLachlan
md
mdf
mdpd
mDPD
meam
MEAMC
meamf
meanDist
mech
mechanice
mechanim
Mecke
mediumaquamarine
mediumblue
@@ -1364,24 +1547,26 @@ membered
Mendelev
mer
Meremianin
Mersenne
Merz
mescscopic
meshless
meso
mesocopic
mesoparticle
mesoscale
mesoscopic
metadynamics
Metadynamics
Methfessel
methine
Metin
meV
Mezei
mgpt
MGPT
mgptfast
mh
micelle
micelles
michael
michele
Mickel
@@ -1389,7 +1574,6 @@ microcanonical
microelastic
microporous
Microscale
microsec
midnightblue
mie
Mie
@@ -1406,6 +1590,7 @@ minorder
minSteps
mintcream
Mintmire
Miron
mis
Mises
Mishin
@@ -1417,19 +1602,24 @@ mK
mkdir
mkv
mlparks
mlutiple
Mniszewski
mnt
mobi
modc
Modell
modelled
modelling
Modelling
Modine
mofff
MOFFF
Mohd
mol
Mol
molfile
Molfile
moltemplate
momoner
momb
Monaghan
Monaghans
monodisperse
@@ -1438,22 +1628,29 @@ monovalent
Montalenti
Montero
Morefoo
Morfill
Mori
Moriya
morris
Morriss
morse
Morteza
Mosayebi
Moseler
Moskalev
mov
mpi
Mpi
MPI
mpicc
mpiCC
mpich
mpicolor
mpicxx
mpiexec
mpiio
mpirun
mplayer
Mryglod
mscg
MSCG
msd
@@ -1466,6 +1663,7 @@ Mtchell
Mth
mtk
Mtotal
muB
Muccioli
Mukherjee
Mulders
@@ -1474,6 +1672,7 @@ multibody
Multibody
multicenter
multicmd
multicomponent
multicore
multielectron
multinode
@@ -1487,8 +1686,7 @@ Murdick
Murtola
Murty
Muser
mutli
mutliple
Muto
muVT
mux
muy
@@ -1496,6 +1694,7 @@ muz
mv
mV
Mvapich
mvv
MxN
myCompute
myIndex
@@ -1503,11 +1702,15 @@ mylammps
mysocket
myTemp
myVec
na
nabla
Nagaosa
Nakano
namespace
namespaces
nan
NaN
Nandor
Nangletype
nangletypes
Nangletypes
@@ -1517,10 +1720,11 @@ Nanoletters
nanometer
nanometers
nanoparticles
nanosec
nanotubes
Narulkar
nasa
nasr
natively
Natoli
natoms
Natoms
@@ -1554,20 +1758,25 @@ Ndof
Ndouble
ndx
neb
neel
Neel
Neelov
neighbouring
Negre
nelem
Nelement
Nelements
nemd
netcdf
Nettleton
Neumann
Nevent
nevery
Nevery
Newns
newtype
Neyts
Nf
nfft
nfile
Nfile
Nfreq
@@ -1576,15 +1785,18 @@ Ng
nghost
Nghost
Ngpu
Ngyuen
nh
nharmonic
nhc
NiAlH
Nicklas
Niklasson
Nimpropertype
Ninteger
Nissila
nist
nitride
nitrides
niu
Nk
@@ -1594,6 +1806,7 @@ Nlines
nlocal
Nlocal
Nlog
nlp
nm
Nm
Nmax
@@ -1606,8 +1819,7 @@ nocoeff
nodeless
noforce
Noid
Nonbond
nonbonded
nolib
nonequilibrium
nongauss
nonGaussian
@@ -1650,29 +1862,33 @@ Ns
Nsample
nsec
Nskip
Nspecies
nsq
Nstart
nstats
Nstep
Nsteplast
Nstop
nsub
Nswap
Nt
Ntable
ntheta
nthreads
Ntptask
Ntriples
Ntype
ntypes
Ntypes
nucleotides
nulcear
num
numa
numactl
numericalfreedom
numerics
numpy
Numpy
Nurdin
Nvalue
Nvaluelast
Nvalues
@@ -1691,13 +1907,15 @@ ny
Ny
nz
Nz
ocl
octahedral
octants
ohenrich
ok
OKeefe
OKeefe
Okabe
Okamoto
O'Keefe
OKeefe
oldlace
Oleinik
Olfason
@@ -1707,6 +1925,7 @@ omegaDD
omegax
omegay
omegaz
Omelyan
omp
OMP
onelevel
@@ -1716,12 +1935,10 @@ ons
OO
openKIM
OpenMP
openmpi
opls
Oppelstrup
optionns
orangered
orderomg
organised
organometallic
orientational
orientorder
@@ -1729,20 +1946,20 @@ Orlikowski
ornl
Ornstein
Orsi
ortho
orthonormal
orthorhombic
ot
Ouldridge
outfile
outmost
outpur
outputss
outut
Ouyang
overlayed
overviewed
Ovito
oxdna
oxDNA
oxygens
padua
Padua
palegoldenrod
@@ -1756,7 +1973,6 @@ papayawhip
paquay
Paquay
parallelepiped
parallelipiped
Parallelizable
parallelization
parallelized
@@ -1766,19 +1982,18 @@ parameterization
parameterizations
parameterize
parameterized
parametrization
parametrized
params
Parinello
parmin
Parrinello
Partay
partices
Particuology
pastewka
Pastewka
pathangle
Patomtrans
Pattnaik
Pavese
Paxton
pbc
pc
pchain
@@ -1786,23 +2001,26 @@ Pchain
Pdamp
pdb
pdf
pdfs
pdim
pe
Peachey
peachpuff
Pearlman
Pedersen
peID
Peng
peptide
peratom
perfoms
Pergamon
peri
Peridymaics
peridynamic
Peridynamic
peridynamics
Peridynamics
perl
permittivity
perp
Perram
persp
Persp
@@ -1812,18 +2030,20 @@ Pettifor
pfactor
ph
Phillpot
phiphi
phonon
phophorous
phosphide
Phs
Physica
physik
Piaggi
picocoulomb
picocoulombs
picogram
picograms
picosecond
picoseconds
picosend
pid
Pieter
pimd
@@ -1839,7 +2059,10 @@ plog
ploop
PloS
plt
plumedfile
pmb
Pmolrotate
Pmoltrans
pN
png
Poiseuille
@@ -1849,18 +2072,20 @@ polarizability
polarizable
Polarizable
polarizables
polarizer
Politano
polyA
polybond
polydisperse
polydispersity
polyhedra
popen
popstore
Poresag
pos
Poschel
posix
Postma
postprocessing
potin
Pourtois
powderblue
@@ -1870,14 +2095,16 @@ prd
pre
Pre
prec
preexponential
preceed
preceeded
precession
prefactor
prefactors
prepend
preprint
preprocessor
printf
printflag
priori
Priya
proc
Proc
@@ -1896,13 +2123,15 @@ pstyle
Ptarget
pthread
pthreads
ptm
PTM
ptr
pu
purdue
pushded
pushstore
pvar
pw
pwqmmm
px
Px
pxx
@@ -1913,6 +2142,7 @@ Py
pydir
pylammps
PyLammps
pymodule
pymol
pypar
Pyy
@@ -1923,9 +2153,11 @@ qbmsst
qcore
qdist
qE
qeff
qeq
QeQ
QEq
qfactor
qfile
qi
Qi
@@ -1940,8 +2172,8 @@ qoffload
qopenmp
qoverride
qtb
quadrupolar
Quant
quantic
quartic
quaternion
quaternions
@@ -1950,6 +2182,10 @@ quatj
quatk
quatw
Queteschiner
qw
qx
qy
qz
radian
radians
Rafferty
@@ -1957,7 +2193,9 @@ rahman
Rahman
Raman
ramped
ramping
Ramprasad
Randisi
randomizations
Raphson
Rappe
@@ -1971,32 +2209,32 @@ Rcut
rcutfac
rdc
rdf
RDideal
README
realtime
reamin
reax
REAXC
ReaxFF
rebalance
rebalancing
rebo
recentered
recentering
recursing
Ree
refactored
regoin
Reinders
relect
relesed
reinit
relink
relTol
remappings
remediate
Ren
Rendon
reneighbor
reneighboring
Reneighboring
reneighborings
Rensselaer
reparametrizing
reparameterizing
repo
representable
repuls
rescale
@@ -2011,7 +2249,9 @@ responder
resquared
REsquared
restartfile
restartinfo
rethrowing
Revenga
rewrap
rezwanur
rfac
@@ -2023,15 +2263,20 @@ rheological
rhodo
Rhodo
rhodopsin
rhok
rhorho
rhosum
ri
Ri
Ribiere
richard
rigidID
rigidify
rij
rIJ
Rij
RIj
Rik
Rin
Rino
RiRj
@@ -2040,10 +2285,18 @@ Rix
Riy
rj
Rj
Rjinner
RjinnerN
Rjk
rjones
Rjouter
RjouterN
rk
rkf
Rkinner
RkinnerN
Rkouter
RkouterN
rmask
Rmask
rmax
@@ -2052,24 +2305,32 @@ rmdir
rmin
Rmin
RMS
rmsd
rnage
rNEMD
ro
Rochus
Rockett
Rohart
Ronchetti
Rosati
Rossky
rosybrown
rotationally
rotationsl
Rovigatti
royalblue
rozero
Rperp
Rr
rRESPA
Rspace
rsq
Rubensson
Rubia
Rudd
Rudra
Rudranarayan
Rudzinski
Runge
runtime
Rutuparna
@@ -2084,11 +2345,14 @@ saed
safezone
Safran
Sagui
Saidi
Salles
sandia
Sandia
sandybrown
sc
scafacos
SCAFACOS
scalability
scalable
Scalable
@@ -2096,32 +2360,43 @@ scalexy
scalexz
scaleyz
Schaik
Schilfgarde
Schiotz
Schlitter
Schmid
Schoen
Schotte
Schulten
Schunk
Schuring
Schwen
scriping
Scripta
sdk
sdpd
SDPD
seagreen
Secor
sectoring
sed
segmental
Seifert
sellerio
Sellerio
Semaev
semiaxes
semimetals
Semin
Sensable
Sep
seqdep
Serpico
setfl
setforce
Sethna
setmask
Setmask
setpoint
setvel
severeal
sfftw
Sg
Shan
@@ -2137,7 +2412,6 @@ Shenderova
Shiga
Shinoda
shockvel
shoule
si
SiC
Siepmann
@@ -2145,8 +2419,8 @@ Sij
Sikandar
Silbert
Silling
Sim
Simul
simulataneous
simulations
Sinnott
sinusoid
@@ -2157,18 +2431,23 @@ Sival
sizeI
sizeJ
sizex
sj
sjplimp
sjtu
skyblue
Skylake
slateblue
slategray
slater
Slepoy
sligthly
Sliozberg
sLLG
sllod
sm
smallbig
smallint
Smallint
smallsmall
smd
SMD
smi
@@ -2181,9 +2460,9 @@ snapcoeff
snaphots
snapparam
snav
Snodin
Sodani
Soderlind
softed
solvated
Sorensen
soundspeed
@@ -2194,18 +2473,23 @@ Spearot
Spellmeyer
sph
SPH
spheriods
Spickermann
splined
spparks
Springer
springgreen
spx
spz
sqrt
src
srd
Srinivasan
Srolovitz
srp
srun
ss
ssao
stamoor
stamoore
stanford
Starikov
@@ -2217,6 +2501,7 @@ statvolt
stdin
steelblue
Stegailov
Steinbach
Steinhardt
Steinhauser
Stepaniants
@@ -2234,6 +2519,7 @@ stopstep
Stouch
Straatsma
Stratford
Strathclyde
Straub
strcmp
streitz
@@ -2242,29 +2528,25 @@ Streiz
strided
strietz
Stukowski
stylecomputes
Su
subbox
subcutoff
subdirectory
subdomains
subinterval
subintervals
Subramaniyan
subscripted
subscripting
substeps
substyle
substyles
sudo
Sugaku
Suhai
Sukumaran
Sulc
sumsq
Sunderland
superset
supersphere
Supinski
surc
surfactants
Sutmann
svn
sw
Swegat
swiggle
@@ -2278,72 +2560,77 @@ symplectic
Synechococcus
sys
sysdim
sysmte
Syst
Sz
Tabbernor
tabinner
Tadmor
Tafipolsky
tagID
tagint
Tait
taitwater
Tajkhorshid
Tamaskovics
tanh
Tartakovsky
taskset
taubi
tb
tchain
Tchain
Tcom
tcsh
tdamp
tdpd
tDPD
Tdrude
Technolgy
Telsa
tempCorrCoeff
templated
Templeton
Tequil
ters
tersoff
Tersoff
tesselation
tesselations
Tetot
tex
tfac
tfmc
tfMC
th
Thakkar
Thakker
thb
thei
Theor
thermalization
thermalize
thermalized
Thermalized
thermalizing
Thermalizing
thermo
thermochemical
thermochemistry
thermodynamic
thermodynamically
Thermophysical
thermostate
thermostated
thermostates
thermostating
Thermostating
thermostatted
thermostatting
Thermostatting
Thes
Thess
Thexe
Thiaville
Thibaudeau
Thijsse
Thirumalai
threebody
thrid
ThunderX
thylakoid
THz
Tigran
Tij
Tildesley
timespan
@@ -2368,7 +2655,9 @@ Tmin
tmp
tN
Tobias
tokyo
tol
toolchain
topologies
Torder
torsions
@@ -2381,25 +2670,32 @@ tptask
tqx
tqy
tqz
traceless
tradeoff
traj
Tranchida
transferability
translational
Translational
trate
Tref
Tretyakov
tri
triangleflag
Tribello
triclinic
Triclinic
triflag
trigonal
trilinear
Trinkle
tripflag
tris
trj
trott
Trott
Trung
Trushin
tscale
Tschopp
Tsige
@@ -2408,6 +2704,7 @@ Tstart
tstat
Tstop
Tsuzuki
tt
Tt
TThis
ttm
@@ -2416,6 +2713,7 @@ Tuckerman
tue
Turkand
Tutein
tweakable
twobody
twojmax
Tx
@@ -2429,10 +2727,14 @@ ub
Uberuaga
uChem
uCond
uef
UEF
ufm
Uhlenbeck
Ui
uk
ul
ulb
uloop
ulsph
uMech
@@ -2440,7 +2742,6 @@ umin
Umin
un
unary
unbonded
uncomment
uncompute
underprediction
@@ -2457,7 +2758,6 @@ unphysical
unphysically
unscaled
unsets
unshifted
unsmoothed
unsolvated
unsplit
@@ -2466,9 +2766,11 @@ untar
untilted
upenn
upto
Urbakh
Urbana
usec
userguide
username
usr
util
utils
@@ -2483,23 +2785,24 @@ valgrind
Valone
valuev
Valuev
valus
valuse
Vanden
varavg
Varshalovich
Varshney
vashishta
Vashishta
vasp
vcm
Vcm
vdim
vdisplace
vdW
vec
vectorial
vectorization
Vectorization
vectorized
Vectorized
vel
velocites
Verlag
verlet
Verlet
@@ -2514,13 +2817,13 @@ Virial
virialmode
virials
virtualenv
virutal
viscoelastic
viscoelasticity
viscosities
viscously
vizplotgui
Vj
Vkl
vlo
vmax
vmd
@@ -2529,6 +2832,7 @@ VMDHOME
vn
Voigt
volfactor
Volpe
volpress
volumetric
von
@@ -2542,6 +2846,7 @@ Voth
vpz
vratio
Vries
Vsmall
Vstream
vtarget
vtk
@@ -2564,31 +2869,33 @@ Waals
Wadley
wallstyle
walltime
warmup
wavefunction
Waltham
wavepacket
wavepackets
wavevector
wB
Wbody
webpage
Weckner
WeinenE
Wennberg
Westview
wget
Whelan
whenthe
whitesmoke
whitespace
Wi
Wicaksono
wih
Wijk
wildcard
Wildcard
Wirnsberger
wirtes
witin
wn
Wolde
workflow
Worley
Wriggers
Wuppertal
Wurtzite
www
wx
@@ -2603,11 +2910,13 @@ xb
Xc
xcm
Xcm
Xcode
xCORE
Xeon
xflag
xhi
xHost
Xiaohu
Xiaowang
xk
xlat
@@ -2621,6 +2930,7 @@ Xmovie
xmu
Xmu
XP
xplane
XPlor
xrd
xs
@@ -2634,6 +2944,7 @@ xyz
xz
xzhou
Yamada
Yazdani
Ybar
ybox
Yc
@@ -2652,6 +2963,7 @@ yu
Yu
yukawa
Yukawa
Yusof
yx
yy
yz
@@ -2660,9 +2972,11 @@ zbl
ZBL
Zc
zcm
Zeeman
Zepeda
zflag
Zhang
Zhen
zhi
Zhou
Zhu
@@ -2673,6 +2987,7 @@ Ziegenhain
Zj
zlim
zlo
zmq
zN
zs
zsu