more spelling fixes and occational re-edits

-D PLUMED_MODE=value       # Linkage mode for PLUMED, value = static (default), shared, or runtime :pre

If DOWNLOAD_PLUMED is set to "yes", the PLUMED library will be

downloaded (the version of that is hardcoded to a vetted version of

downloaded (the version of that is hard-coded to a vetted version of

PLUMED, usually a recent stable release version) and built inside the

CMake build directory.  If DOWNLOAD_PLUMED is set to "no" (the default),

CMake will try to detect an installed version of PLUMED and link to

created in lib/plumed to point into the location of the PLUMED build to

use and also a new file lib/plumed/Makefile.lammps is created with

settings suitable for LAMMPS to compile and link PLUMED in the desired

linkage mode. After this step is compleded, you can install the

linkage mode. After this step is completed, you can install the

USER-PLUMED package and compile LAMMPS in the usual manner:

make yes-user-plumed 

portable, and thus set to be the default.

If you want to change the linkage mode, you have to re-run "make

lib-plumed" with the desired settings [and] do a reinstall if the

lib-plumed" with the desired settings [and] do a re-install if the

USER-PLUMED package with "make yes-user-plumed" to update the required

makefile settings with the changes in the lib/plumed folder.

[Makefile.machine setting]:

LMP_INC = -DLAMMPS_SMALLBIG    # or -DLAMMPS_BIGBIG or -DLAMMPS_SMALLSMALL :pre

                               # default is LAMMMPS_SMALLBIG if not specified

                               # default is LAMMPS_SMALLBIG if not specified

[CMake and make info]:

The default "smallbig" setting allows for simulations with:

experience in using cygwin.  If you do come across portability problems

requiring changes to the LAMMPS source code, or figure out corrections

yourself, please report them on the lammps-users mailing list, or file

them as an issue or pull request on the LAMMPS github project.

them as an issue or pull request on the LAMMPS GitHub project.

Using a cross-compiler :h4,link(cross)

strings are assigned to variables and evaluated, and how they can be

used in input script commands.

(4) The line is broken into "words" separated by whitespace (tabs,

(4) The line is broken into "words" separated by white-space (tabs,

spaces).  Note that words can thus contain letters, digits,

underscores, or punctuation characters.

This is an internal error.  It should normally not occur. :dd

{Bad real space Coulomb cutoff in fix tune/kspace} :dt

{Bad real space Coulombic cutoff in fix tune/kspace} :dt

Fix tune/kspace tried to find the optimal real space Coulomb cutoff using

Fix tune/kspace tried to find the optimal real space Coulombic cutoff using

the Newton-Rhaphson method, but found a non-positive or NaN cutoff :dd

{Balance command before simulation box is defined} :dt

The default minimum order is 2.  This can be reset by the

kspace_modify minorder command. :dd

{Coulomb cut not supported in pair_style buck/long/coul/coul} :dt

{Coulombic cutoff not supported in pair_style buck/long/coul/coul} :dt

Must use long-range Coulombic interactions. :dd

{Coulomb cut not supported in pair_style lj/long/coul/long} :dt

{Coulombic cutoff not supported in pair_style lj/long/coul/long} :dt

Must use long-range Coulombic interactions. :dd

{Coulomb cut not supported in pair_style lj/long/tip4p/long} :dt

{Coulombic cutoff not supported in pair_style lj/long/tip4p/long} :dt

Must use long-range Coulombic interactions. :dd

{Coulomb cutoffs of pair hybrid sub-styles do not match} :dt

{Coulombic cutoffs of pair hybrid sub-styles do not match} :dt

If using a Kspace solver, all Coulomb cutoffs of long pair styles must

If using a Kspace solver, all Coulombic cutoffs of long pair styles must

be the same. :dd

{Coulombic cut not supported in pair_style lj/long/dipole/long} :dt

Self-explanatory. :dd

{Input line quote not followed by whitespace} :dt

{Input line quote not followed by white-space} :dt

An end quote must be followed by whitespace. :dd

An end quote must be followed by white-space. :dd

{Insertion region extends outside simulation box} :dt

{KSpace accuracy too large to estimate G vector} :dt

Reduce the accuracy request or specify gwald explicitly

Reduce the accuracy request or specify gewald explicitly

via the kspace_modify command. :dd

{KSpace accuracy too low} :dt

{Restart file byte ordering is not recognized} :dt

The file does not appear to be a LAMMPS restart file since it doesn't

contain a recognized byte-orderomg flag at the beginning. :dd

contain a recognized byte-ordering flag at the beginning. :dd

{Restart file byte ordering is swapped} :dt