Loading doc/utils/sphinx-config/false_positives.txt +481 −1 Original line number Diff line number Diff line Loading @@ -174,6 +174,7 @@ bcc bcolor bdiam Beckman behaviour Belak Bellott benchmarking Loading Loading @@ -250,7 +251,6 @@ Buyl Bybee bz cadetblue calcalation caltech Caltech Campana Loading Loading @@ -323,6 +323,7 @@ coaxstk codebase coeff Coeff CoefficientN coeffs Coeffs Colberg Loading Loading @@ -772,8 +773,14 @@ funroll fx fy fz Gahler gainsboro Galindo gammaA gammaFactor gammaR Gan GaN ganzenmueller Ganzenmuller Gao Loading @@ -785,35 +792,50 @@ Gavhane gayberne gcc gcmc gdot GeC georg Georg Germann Germano gerolf Gerolf gettimeofday gewald Gezelter Gflop gfortran ghostwhite Giacomo gif gifsicle Gillan Gingold github Github gjf gjwagne gl gld gle globbing Glosli Glotzer gmail gmake gmask Gmask Gordan GPa gpu gpuID gpus graining Graining Grama grana granregion graphene Greathouse greenyellow Greffet Loading @@ -823,12 +845,18 @@ Grest Grigera grmask Grmask gromacs Gromacs Gronbech Groot groupbig Grueneisen gsmooth gstyle GTL gui guidline Gumbsch Gunsteren Gunzenmuller Guo Loading @@ -838,41 +866,62 @@ gzipped Haak Hafskjold Halperin Hamaker haptic Hara Harpertown Harting Hartree Hartrees Hasan Hayoun Hayre hbcut hbnewflag hbond hcp heatconduction Hebenstreit Hecht Heenen Hendrik Henin Henkelman henrich Henrich heristics Herrmann Hertizian hertzian Hertzsch hexahedrons hexatic hexorder Heyes HfO hgrid Hibbs Higdon Hilger histo histogrammed histogramming hmaktulga hoc Hofling Holian Holm holonomic Homebrew hooke Hookean hotpink howto Howto Hoyt hstyle html hTST hu hugoniostat Hugoniostat Loading @@ -882,16 +931,27 @@ hwloc hydrogens hydrostatic hydrostatically Hynninen Hyoungki hyperradius hyperspherical hyperthreaded Hyperthreading ibar ibm icc icosohedral idealgas ideaology IDR ielement ieni ifdefs iff ifort Ihle ij ijk ijkl ik Ikeshoji Loading @@ -905,21 +965,27 @@ Imageint Imagemagick imd Impey imporopers impropers Impropers imroper includelink incompressible incrementing indenter indenters indianred inertiax inertiay inertiaz infty inhomogeneities inhomogeneous init initializations InP inregion integrations integrators Integrators intel Loading @@ -927,7 +993,11 @@ intelmpi interal interatomic Interatomic interconvert intergation interial intermolecular interstitials intra intramolecular ints Loading @@ -938,8 +1008,11 @@ ionocovalent iparam ipi ipp IPython Isele isenthalpic iso isodemic isoenergetic isoenthalpic isokinetic Loading @@ -947,8 +1020,10 @@ isomorphism isothermal isotropically isovolume Isralewitz iteratively Ith Itsets itype itypeN Ivector Loading @@ -969,20 +1044,28 @@ Iyz iz izcm ized Izrailev Izumi Izvekov izz Izz Jacobsen jagreat james Janssens Jaramillo Jarzynski jatempl jea jec Jeffers jewett Jewett ji Jiang Jiao jik JIK jku Joannopoulos Jochim Loading @@ -994,14 +1077,19 @@ jpeglib jpg JPG jpl Jth jtype jtypeN Julien Jupyter Justo Jusufi Jx Jy Jz jzimmer Kadiri Kalia Kamberaj Kapfer Karlsruhe Loading @@ -1009,6 +1097,7 @@ Karplus Karttunen kate Kaufmann Kayser kb kB kbit Loading @@ -1017,29 +1106,40 @@ kcal Kd ke KE Keblinski keflag Keir Kelchner Kelkar Kemper Keyes Khersonskii Khvostov Ki kim kJ kk Klahn Klapp Kloss kmax Kmax knl Kohlmeyer kokkos Kolafa Kollman Kondor konglt Koning Kooser Koskinen Kosztin Kp Kraker Kraus Kremer Kress kspace Kspace KSpace Loading @@ -1049,17 +1149,23 @@ kth Kth Kub Kubo Kumagai Kumar Kuronen Kusters Kutta kx Lackmann Ladd lagrangian lambdai lamda lammps Lammps LAMMPS lammpsplot Lamoureux Landron langevin Langevin Langston Loading @@ -1068,18 +1174,31 @@ Larentzos Laroche lars latencies lattce Laupretre lavenderblush lawngreen lB lbl LBtype lcbop ld ldfftw ldg Lechman Lehoucq Leimkuhler leiu lemonchiffon Lenart lennard Lennard Lenosky Lett Leuven Lewy lgvdw Liang libAtoms libdir libgpu Loading @@ -1095,6 +1214,7 @@ libpoems librar libreax libs ligand lightblue lightcoral lightcyan Loading @@ -1110,12 +1230,16 @@ lightsteelblue lightyellow Likhtman limegreen Lindahl lineflag lineforce linesearch linux Liouville Lisal listfile Littmark Liu Livermore lj lm Loading @@ -1130,22 +1254,31 @@ localTemp localvectors logfile logfreq logicals Lomdahl lookups Lookups LoopVar Lorant lossy lps lrt lsfftw ltbbmalloc lubricateU lucy Lussetti Lustig lx ly Lybrand Lyulin lz Mackay Mackrodt macroparticle Madura Magda Maginn mainboards makefile Loading @@ -1153,14 +1286,18 @@ Makefile makefiles Makefiles makelist Makse malloc Malolepsza Manby Mandadapu Manh manifoldforce Manolopoulos manybody MANYBODY Maras Marrink Marsaglia Marseille Martyna Loading @@ -1169,22 +1306,27 @@ massless masstotal Matchett matlab matplotlib Mattox Mattson maxangle maxbond maxeval Maxfoo maxit maxiter maxsize maxspecial maxSteps maxX mbt Mbytes MBytes McLachlan md mdf meam meamf mech mechanice mechanim Loading @@ -1198,14 +1340,20 @@ mediumslateblue mediumspringgreen mediumturquoise mediumvioletred Mees Mehl Mei Meloni Melrose Mem memalign MEMALIGN membered Mendelev mer Meremianin Merz mescscopic meshless meso mesocopic Loading @@ -1214,21 +1362,29 @@ mesoscale mesoscopic metadynamics Metadynamics methine Metin Mezei mgpt MGPT mgptfast mh micelle michael michele Mickel microcanonical microelastic microporous Microscale microsec midnightblue mie Mie Mikami Militzer Minary mincap minima minimizations minimizer Loading @@ -1239,13 +1395,18 @@ mintcream Mintmire mis Mises Mishin Mishra mistyped mistyrose Mj mK mkdir mkv mlparks mlutiple modc Modell modelled modelling Modelling Loading @@ -1256,11 +1417,18 @@ molfile Molfile moltemplate momoner Monaghan Monaghans monodisperse monodispersity monovalent Montalenti Montero Morefoo morris Morriss morse Moseler Moskalev mov mpi Loading @@ -1279,40 +1447,64 @@ msd msi MSI msm msse msst Mtchell Mth mtk Mtotal Muccioli Mukherjee Mulders multibody Multibody multicenter multicmd multicore multielectron multinode multiphysics multiscale multisectioning multithreading Multithreading Mundy Murdick Murtola Murty Muser mutli mutliple muVT mux muy muz mv mV Mvapich MxN myCompute myIndex mylammps mysocket myTemp myVec nabla Nakano namespace namespaces NaN Nangletype nangletypes Nangletypes nano nanoindentation Nanoletters nanometer nanometers nanoparticles nanosec Narulkar nasa nasr Natoli Loading @@ -1324,41 +1516,67 @@ Navier nb Nbin Nbins nbody Nbody nbondtype Nbondtype nbondtypes Nbondtypes nBOt nbrhood Nbtypes nc Nc nchunk Nchunk ncoeff ncorr ncount nd Ndihedraltype Ndirango ndof Ndof Ndouble ndx neb Neelov neighbouring nelem Nelement Nelements nemd netcdf Neumann nevery Nevery Newns newtype Neyts Nf nfile Nfile Nfreq ng Ng nghost Nghost Ngpu nh nharmonic nhc NiAlH Nicklas Nimpropertype Ninteger Nissila nist nitrides niu Nk nl nlen Nlines nlocal Nlocal Nlog Loading @@ -1366,7 +1584,12 @@ nm Nm Nmax Nmin Nmols nn Nocedal nocite nocoeff nodeless noforce Noid Nonbond Loading @@ -1374,8 +1597,17 @@ nonbonded nonequilibrium nongauss nonGaussian nonlocal Nonlocal Noordhoek nopreliminary Nord norder Nordlund normals Noskov noslip noticable noutcol Noutput noutrow Loading @@ -1390,23 +1622,36 @@ nph NpH Nphi nphug nprocs Nprocs npt nr Nr Nrecompute Nrepeat nreset Nrho nrun Ns Nsample nsec Nskip nsq Nstart nstats Nstep Nsteplast Nstop Nswap Nt Ntable ntheta nthreads Ntptask Ntype ntypes Ntypes nucleotides nulcear num numa Loading @@ -1415,6 +1660,7 @@ numerics numpy Numpy Nvalue Nvaluelast Nvalues nvc nvcc Loading @@ -1426,33 +1672,45 @@ nvt Nwait nx Nx nxnodes ny Ny nz Nz octahedral octants ohenrich ok OKeefe OKeefe oldlace Oleinik Olfason olivedrab Ollila omegaDD omegax omegay omegaz omp OMP onelevel oneway onn ons OO openKIM OpenMP opls Oppelstrup optionns orangered orderomg organised organometallic orientational orientorder Orlikowski ornl Ornstein Orsi Loading @@ -1464,17 +1722,21 @@ outmost outpur outputss outut overlayed overviewed Ovito oxdna oxDNA oxygens padua Padua palegoldenrod palegreen paleturquoise palevioletred Panagiotopoulos Pandit Papaconstantopoulos papayawhip paquay Paquay Loading @@ -1491,8 +1753,10 @@ parametrization parametrized params Parinello parmin Parrinello Partay partices Particuology pastewka Pastewka Loading @@ -1510,30 +1774,45 @@ pe Peachey peachpuff Pearlman Pedersen Peng peratom perfoms Pergamon peri Peridymaics peridynamic Peridynamic peridynamics Peridynamics Perram persp Persp peru Peskin Pettifor pfactor ph Phillpot phonon phophorous phosphide Physica physik picocoulomb picocoulombs picogram picograms picosecond picoseconds picosend pid Pieter pimd Pisarev Pishevar Pitera pj pjintve planeforce Plathe Loading @@ -1541,21 +1820,31 @@ Plimpton plog ploop PloS plt pmb pN png Poiseuille Polak polarizabilities polarizability polarizable Polarizable polarizables Politano polyA polybond polydisperse polydispersity popen popstore pos Poschel posix Postma postprocessing potin Pourtois powderblue ppn pppm Loading @@ -1563,10 +1852,15 @@ prd pre Pre prec preexponential prefactor prefactors prepend preprint preprocessor printf printflag Priya proc Proc procs Loading @@ -1576,6 +1870,7 @@ Ps pscreen pscrozi psec pseudodynamics pseudopotential Pstart Pstop Loading @@ -1590,30 +1885,45 @@ pushded pushstore pvar pw px Px pxx Pxx Pxy py Py pydir pylammps PyLammps pymol pypar Pyy pz Pz Pzz qbmsst qcore qdist qE qeq QeQ QEq qfile qi Qi qj Qj Ql qm Qmin qmmm qmol qoffload qopenmp qoverride qtb Quant quantic quartic quaternion quaternions Loading @@ -1624,9 +1934,13 @@ quatw Queteschiner radian radians Rafferty rahman Rahman Raman ramped Ramprasad randomizations Raphson Rappe Ravelo Loading @@ -1641,14 +1955,19 @@ rdc rdf README realtime reamin reax ReaxFF rebalance rebalancing rebo recentered recentering recursing Ree regoin Reinders relect relesed relTol remappings Loading @@ -1660,6 +1979,8 @@ Reneighboring reneighborings Rensselaer reparametrizing representable repuls rescale rescaled rescales Loading @@ -1667,12 +1988,17 @@ rescaling Rescaling respa RESPA respecified responder resquared REsquared restartfile rethrowing rewrap rezwanur rfac rfile rg Rg Rhaphson rheological Loading @@ -1681,13 +2007,16 @@ Rhodo rhodopsin rhosum Ri Ribiere richard rigidID rigidify rij Rij RIj Rin Rino RiRj Risi Rix Riy Loading @@ -1701,11 +2030,13 @@ rmask Rmask rmax Rmax rmdir rmin Rmin RMS rNEMD ro Rockett Ronchetti Rosati Rossky Loading @@ -1713,19 +2044,28 @@ rosybrown rotationally rotationsl royalblue rozero Rperp rRESPA Rspace Rubia Rudd Rudra Rudranarayan Runge runtime Rutuparna rx Ryckaert Rycroft Rydbergs Rz saddlebrown Sadigh saed safezone Safran Sagui Salles sandia Sandia Loading @@ -1737,7 +2077,12 @@ Scalable scalexy scalexz scaleyz Schaik Schlitter Schmid Schoen Schulten Schunk Schwen scriping Scripta Loading @@ -1745,9 +2090,11 @@ sdk seagreen Secor sed segmental sellerio Sellerio semiaxes semimetals Semin Sensable setfl Loading @@ -1755,26 +2102,42 @@ setforce setmask Setmask setpoint setvel severeal sfftw Sg Shan shapex shapey shapez shapshot shardlow Shardlow shawn Shen Shenderova Shiga Shinoda shockvel shoule si SiC Siepmann Sij Sikandar Silbert Silling Simul simulataneous simulatoins Sinnott sinusoid sinusoidally SiO Sirk Sival sizeI sizeJ sizex sjplimp sjtu Loading @@ -1782,6 +2145,9 @@ skyblue slateblue slategray slater Slepoy sligthly Sliozberg sllod smallint Smallint Loading @@ -1793,9 +2159,17 @@ Smit smtbq sna snad snapcoeff snaphots snapparam snav Sodani Soderlind softed solvated Sorensen soundspeed Souza sp spacings Spearot Loading @@ -1804,32 +2178,56 @@ sph SPH spheriods spparks Springer springgreen sqrt src srd Srolovitz srp srun ss ssao stamoore stanford Starikov startstep Startstep statcoul statcoulombs statvolt stdin steelblue Stegailov Steinhardt Steinhauser Stepaniants stepwise Stesmans Stillinger stk Stockmayer Stoddard stoichiometric stoichiometry Stokesian Stoll stopstep Stouch Straatsma Stratford Straub strcmp streitz Streitz Streiz strided strietz Stukowski stylecomputes Su subbox subcutoff subdirectory subdomains subinterval Loading @@ -1838,13 +2236,19 @@ Subramaniyan subscripted subscripting substeps substyle substyles sudo Sukumaran sumsq Sunderland superset supersphere Supinski surc surfactants sw Swegat swiggle Swiler Swol Loading @@ -1854,15 +2258,21 @@ sy Sy symplectic Synechococcus sys sysdim sysmte Syst Sz Tabbernor tabinner Tadmor tagint Tait taitwater Tajkhorshid tanh taskset taubi tchain Tchain Tcom Loading @@ -1874,21 +2284,31 @@ Telsa tempCorrCoeff templated Templeton ters tersoff Tersoff tesselation tesselations Tetot tex tfmc tfMC th Thakkar Thakker thb thei Theor thermalization thermalize thermalized thermalizing thermo thermochemical thermochemistry thermodynamic thermodynamically Thermophysical thermostate thermostated thermostates Loading @@ -1897,44 +2317,75 @@ Thermostating thermostatted thermostatting Thermostatting Thes Thess Thexe Thijsse Thirumalai threebody thrid thylakoid THz Tij Tildesley timespan timestamp timestamps timestep timestepping timesteps TiN TiO Tirrell Titer Tji Tk Tkin tloop tlsph tmax Tmax tmd Tmin tmp tN Tobias tol topologies Torder torsions Tosi Toukmaji Toxvaerd tpa tpc tptask tqx tqy tqz tradeoff traj transferability translational trate Tref Tretyakov tri triangleflag triclinic triflag trigonal trilinear tripflag tris trj trott Trott Trung tscale Tschopp Tsige Tsrd Tstart tstat Tstop Loading @@ -1946,11 +2397,16 @@ tu Tuckerman tue Turkand Tutein twobody twojmax Tx txt typeI typeJ typeN Tz Tzou ub Uberuaga uChem Loading @@ -1958,12 +2414,14 @@ uCond Uhlenbeck Ui uk ul uloop ulsph uMech umin Umin un unary unbonded uncomment uncompute Loading @@ -1978,21 +2436,37 @@ unix unoptimized unpadded unphysical unphysically unscaled unsets unshifted unsmoothed unsolvated unsplit unstrained untar untilted upenn upto Urbana usec userguide usr util utils utsa Uttormark uvm uwo vacf valent Valeriu valgrind Valone valuev Valuev valus valuse Varshalovich Varshney vashishta Loading @@ -2002,21 +2476,27 @@ Vcm vdim vdisplace vec vectorial vectorization vectorized Vectorized vel velocites Verlag verlet Verlet ves vhi vibrational Vij Vikas virial Virial virialmode virials virtualenv virutal viscoelastic viscoelasticity viscosities viscously Loading Loading
doc/utils/sphinx-config/false_positives.txt +481 −1 Original line number Diff line number Diff line Loading @@ -174,6 +174,7 @@ bcc bcolor bdiam Beckman behaviour Belak Bellott benchmarking Loading Loading @@ -250,7 +251,6 @@ Buyl Bybee bz cadetblue calcalation caltech Caltech Campana Loading Loading @@ -323,6 +323,7 @@ coaxstk codebase coeff Coeff CoefficientN coeffs Coeffs Colberg Loading Loading @@ -772,8 +773,14 @@ funroll fx fy fz Gahler gainsboro Galindo gammaA gammaFactor gammaR Gan GaN ganzenmueller Ganzenmuller Gao Loading @@ -785,35 +792,50 @@ Gavhane gayberne gcc gcmc gdot GeC georg Georg Germann Germano gerolf Gerolf gettimeofday gewald Gezelter Gflop gfortran ghostwhite Giacomo gif gifsicle Gillan Gingold github Github gjf gjwagne gl gld gle globbing Glosli Glotzer gmail gmake gmask Gmask Gordan GPa gpu gpuID gpus graining Graining Grama grana granregion graphene Greathouse greenyellow Greffet Loading @@ -823,12 +845,18 @@ Grest Grigera grmask Grmask gromacs Gromacs Gronbech Groot groupbig Grueneisen gsmooth gstyle GTL gui guidline Gumbsch Gunsteren Gunzenmuller Guo Loading @@ -838,41 +866,62 @@ gzipped Haak Hafskjold Halperin Hamaker haptic Hara Harpertown Harting Hartree Hartrees Hasan Hayoun Hayre hbcut hbnewflag hbond hcp heatconduction Hebenstreit Hecht Heenen Hendrik Henin Henkelman henrich Henrich heristics Herrmann Hertizian hertzian Hertzsch hexahedrons hexatic hexorder Heyes HfO hgrid Hibbs Higdon Hilger histo histogrammed histogramming hmaktulga hoc Hofling Holian Holm holonomic Homebrew hooke Hookean hotpink howto Howto Hoyt hstyle html hTST hu hugoniostat Hugoniostat Loading @@ -882,16 +931,27 @@ hwloc hydrogens hydrostatic hydrostatically Hynninen Hyoungki hyperradius hyperspherical hyperthreaded Hyperthreading ibar ibm icc icosohedral idealgas ideaology IDR ielement ieni ifdefs iff ifort Ihle ij ijk ijkl ik Ikeshoji Loading @@ -905,21 +965,27 @@ Imageint Imagemagick imd Impey imporopers impropers Impropers imroper includelink incompressible incrementing indenter indenters indianred inertiax inertiay inertiaz infty inhomogeneities inhomogeneous init initializations InP inregion integrations integrators Integrators intel Loading @@ -927,7 +993,11 @@ intelmpi interal interatomic Interatomic interconvert intergation interial intermolecular interstitials intra intramolecular ints Loading @@ -938,8 +1008,11 @@ ionocovalent iparam ipi ipp IPython Isele isenthalpic iso isodemic isoenergetic isoenthalpic isokinetic Loading @@ -947,8 +1020,10 @@ isomorphism isothermal isotropically isovolume Isralewitz iteratively Ith Itsets itype itypeN Ivector Loading @@ -969,20 +1044,28 @@ Iyz iz izcm ized Izrailev Izumi Izvekov izz Izz Jacobsen jagreat james Janssens Jaramillo Jarzynski jatempl jea jec Jeffers jewett Jewett ji Jiang Jiao jik JIK jku Joannopoulos Jochim Loading @@ -994,14 +1077,19 @@ jpeglib jpg JPG jpl Jth jtype jtypeN Julien Jupyter Justo Jusufi Jx Jy Jz jzimmer Kadiri Kalia Kamberaj Kapfer Karlsruhe Loading @@ -1009,6 +1097,7 @@ Karplus Karttunen kate Kaufmann Kayser kb kB kbit Loading @@ -1017,29 +1106,40 @@ kcal Kd ke KE Keblinski keflag Keir Kelchner Kelkar Kemper Keyes Khersonskii Khvostov Ki kim kJ kk Klahn Klapp Kloss kmax Kmax knl Kohlmeyer kokkos Kolafa Kollman Kondor konglt Koning Kooser Koskinen Kosztin Kp Kraker Kraus Kremer Kress kspace Kspace KSpace Loading @@ -1049,17 +1149,23 @@ kth Kth Kub Kubo Kumagai Kumar Kuronen Kusters Kutta kx Lackmann Ladd lagrangian lambdai lamda lammps Lammps LAMMPS lammpsplot Lamoureux Landron langevin Langevin Langston Loading @@ -1068,18 +1174,31 @@ Larentzos Laroche lars latencies lattce Laupretre lavenderblush lawngreen lB lbl LBtype lcbop ld ldfftw ldg Lechman Lehoucq Leimkuhler leiu lemonchiffon Lenart lennard Lennard Lenosky Lett Leuven Lewy lgvdw Liang libAtoms libdir libgpu Loading @@ -1095,6 +1214,7 @@ libpoems librar libreax libs ligand lightblue lightcoral lightcyan Loading @@ -1110,12 +1230,16 @@ lightsteelblue lightyellow Likhtman limegreen Lindahl lineflag lineforce linesearch linux Liouville Lisal listfile Littmark Liu Livermore lj lm Loading @@ -1130,22 +1254,31 @@ localTemp localvectors logfile logfreq logicals Lomdahl lookups Lookups LoopVar Lorant lossy lps lrt lsfftw ltbbmalloc lubricateU lucy Lussetti Lustig lx ly Lybrand Lyulin lz Mackay Mackrodt macroparticle Madura Magda Maginn mainboards makefile Loading @@ -1153,14 +1286,18 @@ Makefile makefiles Makefiles makelist Makse malloc Malolepsza Manby Mandadapu Manh manifoldforce Manolopoulos manybody MANYBODY Maras Marrink Marsaglia Marseille Martyna Loading @@ -1169,22 +1306,27 @@ massless masstotal Matchett matlab matplotlib Mattox Mattson maxangle maxbond maxeval Maxfoo maxit maxiter maxsize maxspecial maxSteps maxX mbt Mbytes MBytes McLachlan md mdf meam meamf mech mechanice mechanim Loading @@ -1198,14 +1340,20 @@ mediumslateblue mediumspringgreen mediumturquoise mediumvioletred Mees Mehl Mei Meloni Melrose Mem memalign MEMALIGN membered Mendelev mer Meremianin Merz mescscopic meshless meso mesocopic Loading @@ -1214,21 +1362,29 @@ mesoscale mesoscopic metadynamics Metadynamics methine Metin Mezei mgpt MGPT mgptfast mh micelle michael michele Mickel microcanonical microelastic microporous Microscale microsec midnightblue mie Mie Mikami Militzer Minary mincap minima minimizations minimizer Loading @@ -1239,13 +1395,18 @@ mintcream Mintmire mis Mises Mishin Mishra mistyped mistyrose Mj mK mkdir mkv mlparks mlutiple modc Modell modelled modelling Modelling Loading @@ -1256,11 +1417,18 @@ molfile Molfile moltemplate momoner Monaghan Monaghans monodisperse monodispersity monovalent Montalenti Montero Morefoo morris Morriss morse Moseler Moskalev mov mpi Loading @@ -1279,40 +1447,64 @@ msd msi MSI msm msse msst Mtchell Mth mtk Mtotal Muccioli Mukherjee Mulders multibody Multibody multicenter multicmd multicore multielectron multinode multiphysics multiscale multisectioning multithreading Multithreading Mundy Murdick Murtola Murty Muser mutli mutliple muVT mux muy muz mv mV Mvapich MxN myCompute myIndex mylammps mysocket myTemp myVec nabla Nakano namespace namespaces NaN Nangletype nangletypes Nangletypes nano nanoindentation Nanoletters nanometer nanometers nanoparticles nanosec Narulkar nasa nasr Natoli Loading @@ -1324,41 +1516,67 @@ Navier nb Nbin Nbins nbody Nbody nbondtype Nbondtype nbondtypes Nbondtypes nBOt nbrhood Nbtypes nc Nc nchunk Nchunk ncoeff ncorr ncount nd Ndihedraltype Ndirango ndof Ndof Ndouble ndx neb Neelov neighbouring nelem Nelement Nelements nemd netcdf Neumann nevery Nevery Newns newtype Neyts Nf nfile Nfile Nfreq ng Ng nghost Nghost Ngpu nh nharmonic nhc NiAlH Nicklas Nimpropertype Ninteger Nissila nist nitrides niu Nk nl nlen Nlines nlocal Nlocal Nlog Loading @@ -1366,7 +1584,12 @@ nm Nm Nmax Nmin Nmols nn Nocedal nocite nocoeff nodeless noforce Noid Nonbond Loading @@ -1374,8 +1597,17 @@ nonbonded nonequilibrium nongauss nonGaussian nonlocal Nonlocal Noordhoek nopreliminary Nord norder Nordlund normals Noskov noslip noticable noutcol Noutput noutrow Loading @@ -1390,23 +1622,36 @@ nph NpH Nphi nphug nprocs Nprocs npt nr Nr Nrecompute Nrepeat nreset Nrho nrun Ns Nsample nsec Nskip nsq Nstart nstats Nstep Nsteplast Nstop Nswap Nt Ntable ntheta nthreads Ntptask Ntype ntypes Ntypes nucleotides nulcear num numa Loading @@ -1415,6 +1660,7 @@ numerics numpy Numpy Nvalue Nvaluelast Nvalues nvc nvcc Loading @@ -1426,33 +1672,45 @@ nvt Nwait nx Nx nxnodes ny Ny nz Nz octahedral octants ohenrich ok OKeefe OKeefe oldlace Oleinik Olfason olivedrab Ollila omegaDD omegax omegay omegaz omp OMP onelevel oneway onn ons OO openKIM OpenMP opls Oppelstrup optionns orangered orderomg organised organometallic orientational orientorder Orlikowski ornl Ornstein Orsi Loading @@ -1464,17 +1722,21 @@ outmost outpur outputss outut overlayed overviewed Ovito oxdna oxDNA oxygens padua Padua palegoldenrod palegreen paleturquoise palevioletred Panagiotopoulos Pandit Papaconstantopoulos papayawhip paquay Paquay Loading @@ -1491,8 +1753,10 @@ parametrization parametrized params Parinello parmin Parrinello Partay partices Particuology pastewka Pastewka Loading @@ -1510,30 +1774,45 @@ pe Peachey peachpuff Pearlman Pedersen Peng peratom perfoms Pergamon peri Peridymaics peridynamic Peridynamic peridynamics Peridynamics Perram persp Persp peru Peskin Pettifor pfactor ph Phillpot phonon phophorous phosphide Physica physik picocoulomb picocoulombs picogram picograms picosecond picoseconds picosend pid Pieter pimd Pisarev Pishevar Pitera pj pjintve planeforce Plathe Loading @@ -1541,21 +1820,31 @@ Plimpton plog ploop PloS plt pmb pN png Poiseuille Polak polarizabilities polarizability polarizable Polarizable polarizables Politano polyA polybond polydisperse polydispersity popen popstore pos Poschel posix Postma postprocessing potin Pourtois powderblue ppn pppm Loading @@ -1563,10 +1852,15 @@ prd pre Pre prec preexponential prefactor prefactors prepend preprint preprocessor printf printflag Priya proc Proc procs Loading @@ -1576,6 +1870,7 @@ Ps pscreen pscrozi psec pseudodynamics pseudopotential Pstart Pstop Loading @@ -1590,30 +1885,45 @@ pushded pushstore pvar pw px Px pxx Pxx Pxy py Py pydir pylammps PyLammps pymol pypar Pyy pz Pz Pzz qbmsst qcore qdist qE qeq QeQ QEq qfile qi Qi qj Qj Ql qm Qmin qmmm qmol qoffload qopenmp qoverride qtb Quant quantic quartic quaternion quaternions Loading @@ -1624,9 +1934,13 @@ quatw Queteschiner radian radians Rafferty rahman Rahman Raman ramped Ramprasad randomizations Raphson Rappe Ravelo Loading @@ -1641,14 +1955,19 @@ rdc rdf README realtime reamin reax ReaxFF rebalance rebalancing rebo recentered recentering recursing Ree regoin Reinders relect relesed relTol remappings Loading @@ -1660,6 +1979,8 @@ Reneighboring reneighborings Rensselaer reparametrizing representable repuls rescale rescaled rescales Loading @@ -1667,12 +1988,17 @@ rescaling Rescaling respa RESPA respecified responder resquared REsquared restartfile rethrowing rewrap rezwanur rfac rfile rg Rg Rhaphson rheological Loading @@ -1681,13 +2007,16 @@ Rhodo rhodopsin rhosum Ri Ribiere richard rigidID rigidify rij Rij RIj Rin Rino RiRj Risi Rix Riy Loading @@ -1701,11 +2030,13 @@ rmask Rmask rmax Rmax rmdir rmin Rmin RMS rNEMD ro Rockett Ronchetti Rosati Rossky Loading @@ -1713,19 +2044,28 @@ rosybrown rotationally rotationsl royalblue rozero Rperp rRESPA Rspace Rubia Rudd Rudra Rudranarayan Runge runtime Rutuparna rx Ryckaert Rycroft Rydbergs Rz saddlebrown Sadigh saed safezone Safran Sagui Salles sandia Sandia Loading @@ -1737,7 +2077,12 @@ Scalable scalexy scalexz scaleyz Schaik Schlitter Schmid Schoen Schulten Schunk Schwen scriping Scripta Loading @@ -1745,9 +2090,11 @@ sdk seagreen Secor sed segmental sellerio Sellerio semiaxes semimetals Semin Sensable setfl Loading @@ -1755,26 +2102,42 @@ setforce setmask Setmask setpoint setvel severeal sfftw Sg Shan shapex shapey shapez shapshot shardlow Shardlow shawn Shen Shenderova Shiga Shinoda shockvel shoule si SiC Siepmann Sij Sikandar Silbert Silling Simul simulataneous simulatoins Sinnott sinusoid sinusoidally SiO Sirk Sival sizeI sizeJ sizex sjplimp sjtu Loading @@ -1782,6 +2145,9 @@ skyblue slateblue slategray slater Slepoy sligthly Sliozberg sllod smallint Smallint Loading @@ -1793,9 +2159,17 @@ Smit smtbq sna snad snapcoeff snaphots snapparam snav Sodani Soderlind softed solvated Sorensen soundspeed Souza sp spacings Spearot Loading @@ -1804,32 +2178,56 @@ sph SPH spheriods spparks Springer springgreen sqrt src srd Srolovitz srp srun ss ssao stamoore stanford Starikov startstep Startstep statcoul statcoulombs statvolt stdin steelblue Stegailov Steinhardt Steinhauser Stepaniants stepwise Stesmans Stillinger stk Stockmayer Stoddard stoichiometric stoichiometry Stokesian Stoll stopstep Stouch Straatsma Stratford Straub strcmp streitz Streitz Streiz strided strietz Stukowski stylecomputes Su subbox subcutoff subdirectory subdomains subinterval Loading @@ -1838,13 +2236,19 @@ Subramaniyan subscripted subscripting substeps substyle substyles sudo Sukumaran sumsq Sunderland superset supersphere Supinski surc surfactants sw Swegat swiggle Swiler Swol Loading @@ -1854,15 +2258,21 @@ sy Sy symplectic Synechococcus sys sysdim sysmte Syst Sz Tabbernor tabinner Tadmor tagint Tait taitwater Tajkhorshid tanh taskset taubi tchain Tchain Tcom Loading @@ -1874,21 +2284,31 @@ Telsa tempCorrCoeff templated Templeton ters tersoff Tersoff tesselation tesselations Tetot tex tfmc tfMC th Thakkar Thakker thb thei Theor thermalization thermalize thermalized thermalizing thermo thermochemical thermochemistry thermodynamic thermodynamically Thermophysical thermostate thermostated thermostates Loading @@ -1897,44 +2317,75 @@ Thermostating thermostatted thermostatting Thermostatting Thes Thess Thexe Thijsse Thirumalai threebody thrid thylakoid THz Tij Tildesley timespan timestamp timestamps timestep timestepping timesteps TiN TiO Tirrell Titer Tji Tk Tkin tloop tlsph tmax Tmax tmd Tmin tmp tN Tobias tol topologies Torder torsions Tosi Toukmaji Toxvaerd tpa tpc tptask tqx tqy tqz tradeoff traj transferability translational trate Tref Tretyakov tri triangleflag triclinic triflag trigonal trilinear tripflag tris trj trott Trott Trung tscale Tschopp Tsige Tsrd Tstart tstat Tstop Loading @@ -1946,11 +2397,16 @@ tu Tuckerman tue Turkand Tutein twobody twojmax Tx txt typeI typeJ typeN Tz Tzou ub Uberuaga uChem Loading @@ -1958,12 +2414,14 @@ uCond Uhlenbeck Ui uk ul uloop ulsph uMech umin Umin un unary unbonded uncomment uncompute Loading @@ -1978,21 +2436,37 @@ unix unoptimized unpadded unphysical unphysically unscaled unsets unshifted unsmoothed unsolvated unsplit unstrained untar untilted upenn upto Urbana usec userguide usr util utils utsa Uttormark uvm uwo vacf valent Valeriu valgrind Valone valuev Valuev valus valuse Varshalovich Varshney vashishta Loading @@ -2002,21 +2476,27 @@ Vcm vdim vdisplace vec vectorial vectorization vectorized Vectorized vel velocites Verlag verlet Verlet ves vhi vibrational Vij Vikas virial Virial virialmode virials virtualenv virutal viscoelastic viscoelasticity viscosities viscously Loading
