Commit cd55f1f1 authored by Weipeng Mo's avatar Weipeng Mo
Browse files

Add single run guppy & nanoplot

parent e01aaaeb
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script/run_guppy2.sh

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#BSUB -J o_run_guppy
#BSUB -n 8
#BSUB -o %J.stdout
#BSUB -e %J.stderr
#BSUB -q q4gpu
#BSUB -gpu "num=4"


time guppy_basecaller \
  -i fast5 \
  -s guppy_out \
  -c dna_r9.4.1_450bps_hac.cfg \
  --recursive \
  --disable_pings \
  --qscore_filtering \
  --device "cuda:all:100%" 

sendWechat.py

script/run_nanoplot.sh

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#BSUB -J merge_fastq
#BSUB -n 36
#BSUB -o %J.stdout
#BSUB -e %J.stderr

NanoPlot \
  --threads 32 \
  --summary sequencing_summary.txt \
  --loglength \
  -o nanoplot