Commit de3b1e54 authored by ziegenhain@bio.lmu.de's avatar ziegenhain@bio.lmu.de
Browse files

fix CustomMappedBAM

parent f6364e11

zUMIs-master.sh

+1 −1
Original line number Diff line number Diff line
@@ -135,7 +135,7 @@ while getopts ":R:S:f:r:g:o:a:t:s:c:m:l:b:n:N:q:Q:z:u:x:e:p:i:d:X:A:w:j:F:C:y:Y: 
  case $options in

  R ) isslurm=$OPTARG;;

  S ) isStats=$OPTARG;;

  X ) isCustomFASTQ=$OPTARG;;

  X ) CustomMappedBAM=$OPTARG;;

  A ) isCustomFASTQ=$OPTARG;;

  w ) whichStage=$OPTARG;;

  f ) bcread=$OPTARG;;

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