Commit d4074026 authored by Christoph's avatar Christoph
Browse files

escape small issue with missing option

parent b6b36125

zUMIs-BCdetection.R

+4 −2
Original line number Diff line number Diff line
@@ -12,9 +12,11 @@ setwd(opt$out_dir) 
source(paste0(opt$zUMIs_directory,"/barcodeIDFUN.R"))

options(datatable.fread.input.cmd.message=FALSE)

data.table::setDTthreads(threads=opt$num_threads)

if(!is.null(opt$barcodes$barcode_sharing)){

  if(opt$barcodes$barcode_sharing == ""){

    opt$barcodes$barcode_sharing <- NULL

  }

}



#######################################################################

#######################################################################

zUMIs-master.sh

+1 −1
Original line number Diff line number Diff line
@@ -3,7 +3,7 @@ 
# Pipeline to run UMI-seq analysis from fastq to read count tables.

# Authors: Swati Parekh, Christoph Ziegenhain, Beate Vieth & Ines Hellmann

# Contact: sparekh@age.mpg.de or christoph.ziegenhain@ki.se

vers=2.7.2

vers=2.7.2a

currentv=`curl -s https://raw.githubusercontent.com/sdparekh/zUMIs/master/zUMIs-master.sh | grep '^vers=' | cut -f2 -d "="`

if [ "$currentv" != "$vers" ]; then echo -e "------------- \n\n Good news! A newer version of zUMIs is available at https://github.com/sdparekh/zUMIs \n\n-------------"; fi

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