Commit d2fdf50a authored by ziegenhain@bio.lmu.de's avatar ziegenhain@bio.lmu.de
Browse files

fix relative path detection

parent cd19ee57
Loading
Loading
Loading
Loading
+2 −2
Original line number Diff line number Diff line
@@ -186,8 +186,8 @@ whichStage=`echo "$whichStage" | tr '[:upper:]' '[:lower:]'` # convert to all l

memory=`du -sh $genomedir | cut -f1` #STAR genome index size

if [[ ! "$o" =~ ^[/|~] ]] ; then
  o=`pwd`/$o
if [[ ! "$outdir" =~ ^[/|~] ]] ; then
  outdir=`pwd`/$outdir
fi

if [[ "$isslurm" != "no" ]] ; then