Changed somehting in noslurm (cbe58f9f) · Commits · github_fork / ZUMIs

ExampleData/example.Log.final.out

+21 −21

Original line number	Diff line number	Diff line
		Started job on \| Jun 20 08:17:14
		Started mapping on \| Jun 20 08:34:10
		Finished on \| Jun 20 08:35:13
		Mapping speed, Million of reads per hour \| 57.14
		Started job on \| Jun 22 19:13:45
		Started mapping on \| Jun 22 19:19:51
		Finished on \| Jun 22 19:20:09
		Mapping speed, Million of reads per hour \| 170.66

		Number of input reads \| 999985
		Number of input reads \| 853296
		Average input read length \| 50
		UNIQUE READS:
		Uniquely mapped reads number \| 612559
		Uniquely mapped reads % \| 61.26%
		Average mapped length \| 49.32
		Number of splices: Total \| 41665
		Number of splices: Annotated (sjdb) \| 40984
		Number of splices: GT/AG \| 41012
		Number of splices: GC/AG \| 240
		Number of splices: AT/AC \| 43
		Number of splices: Non-canonical \| 370
		Mismatch rate per base, % \| 0.44%
		Uniquely mapped reads number \| 531550
		Uniquely mapped reads % \| 62.29%
		Average mapped length \| 49.33
		Number of splices: Total \| 36122
		Number of splices: Annotated (sjdb) \| 35553
		Number of splices: GT/AG \| 35560
		Number of splices: GC/AG \| 199
		Number of splices: AT/AC \| 41
		Number of splices: Non-canonical \| 322
		Mismatch rate per base, % \| 0.31%
		Deletion rate per base \| 0.01%
		Deletion average length \| 1.23
		Deletion average length \| 1.22
		Insertion rate per base \| 0.01%
		Insertion average length \| 1.25
		MULTI-MAPPING READS:
		Number of reads mapped to multiple loci \| 323350
		% of reads mapped to multiple loci \| 32.34%
		Number of reads mapped to too many loci \| 33
		Number of reads mapped to multiple loci \| 278255
		% of reads mapped to multiple loci \| 32.61%
		Number of reads mapped to too many loci \| 23
		% of reads mapped to too many loci \| 0.00%
		UNMAPPED READS:
		% of reads unmapped: too many mismatches \| 0.00%
		% of reads unmapped: too short \| 5.75%
		% of reads unmapped: other \| 0.65%
		% of reads unmapped: too short \| 4.41%
		% of reads unmapped: other \| 0.68%
		CHIMERIC READS:
		Number of chimeric reads \| 0
		% of chimeric reads \| 0.00%

ExampleData/example.Log.out

+135 −51

Original line number	Diff line number	Diff line
		@@ -147,41 +147,41 @@ quantTranscriptomeBan IndelSoftclipSingleend
		twopass1readsN 18446744073709551615
		twopassMode None
		##### Command Line:
		STAR --genomeDir /data/ngs/genomes/Human/hg38/STAR5idx_noGTF/ --runThreadN 1 --readFilesCommand zcat --sjdbGTFfile /data/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf --outFileNamePrefix /data/share/htp/zUMIs_paper/GitHub_exampledata/example. --outSAMtype BAM Unsorted --outSAMmultNmax 1 --outFilterMultimapNmax 50 --outSAMunmapped Within --sjdbOverhang 49 --twopassMode Basic --readFilesIn /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz
		STAR --genomeDir /data/share/ngs/genomes/Human/hg38/STAR5idx_noGTF/ --runThreadN 15 --readFilesCommand zcat --sjdbGTFfile /data/share/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf --outFileNamePrefix /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example. --outSAMtype BAM Unsorted --outSAMmultNmax 1 --outFilterMultimapNmax 50 --outSAMunmapped Within --sjdbOverhang 49 --twopassMode Basic --readFilesIn /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz
		##### Initial USER parameters from Command Line:
		outFileNamePrefix /data/share/htp/zUMIs_paper/GitHub_exampledata/example.
		outFileNamePrefix /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.
		###### All USER parameters from Command Line:
		genomeDir /data/ngs/genomes/Human/hg38/STAR5idx_noGTF/ ~RE-DEFINED
		runThreadN 1 ~RE-DEFINED
		genomeDir /data/share/ngs/genomes/Human/hg38/STAR5idx_noGTF/ ~RE-DEFINED
		runThreadN 15 ~RE-DEFINED
		readFilesCommand zcat ~RE-DEFINED
		sjdbGTFfile /data/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf ~RE-DEFINED
		outFileNamePrefix /data/share/htp/zUMIs_paper/GitHub_exampledata/example. ~RE-DEFINED
		sjdbGTFfile /data/share/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf ~RE-DEFINED
		outFileNamePrefix /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example. ~RE-DEFINED
		outSAMtype BAM Unsorted ~RE-DEFINED
		outSAMmultNmax 1 ~RE-DEFINED
		outFilterMultimapNmax 50 ~RE-DEFINED
		outSAMunmapped Within ~RE-DEFINED
		sjdbOverhang 49 ~RE-DEFINED
		twopassMode Basic ~RE-DEFINED
		readFilesIn /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz ~RE-DEFINED
		readFilesIn /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz ~RE-DEFINED
		##### Finished reading parameters from all sources

		##### Final user re-defined parameters-----------------:
		runThreadN 1
		genomeDir /data/ngs/genomes/Human/hg38/STAR5idx_noGTF/
		readFilesIn /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz
		runThreadN 15
		genomeDir /data/share/ngs/genomes/Human/hg38/STAR5idx_noGTF/
		readFilesIn /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz
		readFilesCommand zcat
		outFileNamePrefix /data/share/htp/zUMIs_paper/GitHub_exampledata/example.
		outFileNamePrefix /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.
		outSAMtype BAM Unsorted
		outSAMunmapped Within
		outSAMmultNmax 1
		outFilterMultimapNmax 50
		sjdbGTFfile /data/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf
		sjdbGTFfile /data/share/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf
		sjdbOverhang 49
		twopassMode Basic

		-------------------------------
		##### Final effective command line:
		STAR --runThreadN 1 --genomeDir /data/ngs/genomes/Human/hg38/STAR5idx_noGTF/ --readFilesIn /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz --readFilesCommand zcat --outFileNamePrefix /data/share/htp/zUMIs_paper/GitHub_exampledata/example. --outSAMtype BAM Unsorted --outSAMunmapped Within --outSAMmultNmax 1 --outFilterMultimapNmax 50 --sjdbGTFfile /data/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf --sjdbOverhang 49 --twopassMode Basic
		STAR --runThreadN 15 --genomeDir /data/share/ngs/genomes/Human/hg38/STAR5idx_noGTF/ --readFilesIn /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz --readFilesCommand zcat --outFileNamePrefix /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example. --outSAMtype BAM Unsorted --outSAMunmapped Within --outSAMmultNmax 1 --outFilterMultimapNmax 50 --sjdbGTFfile /data/share/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf --sjdbOverhang 49 --twopassMode Basic

		##### Final parameters after user input--------------------------------:
		versionSTAR 20201
		@@ -189,10 +189,10 @@ versionGenome 20101 20200
		parametersFiles -
		sysShell -
		runMode alignReads
		runThreadN 1
		runThreadN 15
		runDirPerm User_RWX
		runRNGseed 777
		genomeDir /data/ngs/genomes/Human/hg38/STAR5idx_noGTF/
		genomeDir /data/share/ngs/genomes/Human/hg38/STAR5idx_noGTF/
		genomeLoad NoSharedMemory
		genomeFastaFiles -
		genomeChainFiles -
		@@ -201,7 +201,7 @@ genomeChrBinNbits 18
		genomeSAsparseD 1
		genomeSuffixLengthMax 18446744073709551615
		genomeFileSizes 0
		readFilesIn /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz
		readFilesIn /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz
		readFilesCommand zcat
		readMatesLengthsIn NotEqual
		readMapNumber 18446744073709551615
		@@ -216,7 +216,7 @@ limitOutSJcollapsed 1000000
		limitOutSJoneRead 1000
		limitBAMsortRAM 0
		limitSjdbInsertNsj 1000000
		outFileNamePrefix /data/share/htp/zUMIs_paper/GitHub_exampledata/example.
		outFileNamePrefix /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.
		outTmpDir -
		outTmpKeep None
		outStd Log
		@@ -317,7 +317,7 @@ chimOutType SeparateSAMold
		chimFilter banGenomicN
		chimSegmentReadGapMax 0
		sjdbFileChrStartEnd -
		sjdbGTFfile /data/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf
		sjdbGTFfile /data/share/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf
		sjdbGTFchrPrefix -
		sjdbGTFfeatureExon exon
		sjdbGTFtagExonParentTranscript transcript_id
		@@ -333,13 +333,13 @@ twopassMode Basic
		----------------------------------------


		Input read files for mate 1, from input string /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz
		-rw-r--r-- 1 ziegenhain ngs 48683440 Jun 20 08:16 /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz
		Input read files for mate 1, from input string /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz
		-rw-r--r-- 1 parekh common 40267824 Jun 22 19:13 /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz

		readsCommandsFile:
		exec > "/data/share/htp/zUMIs_paper/GitHub_exampledata/example._STARtmp/tmp.fifo.read1"
		exec > "/data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example._STARtmp/tmp.fifo.read1"
		echo FILE 0
		zcat "/data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz"
		zcat "/data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz"

		Finished loading and checking parameters
		Reading genome generation parameters:
		@@ -813,7 +813,7 @@ Number of real (reference) chromosomes= 455
		453 chrX 156040895 3066036224
		454 chrY 57227415 3222274048
		455 chrY_KI270740v1_random 37240 3279683584
		Started loading the genome: Tue Jun 20 08:17:14 2017
		Started loading the genome: Thu Jun 22 19:13:45 2017

		Checking Genome sizefile size: 3279945728 bytes; state: good=1 eof=0 fail=0 bad=0
		Checking SA sizefile size: 25156855213 bytes; state: good=1 eof=0 fail=0 bad=0
		@@ -827,52 +827,136 @@ Loading Genome ... done! state: good=1 eof=0 fail=0 bad=0; loaded 3279945728 byt
		SA file size: 25156855213 bytes; state: good=1 eof=0 fail=0 bad=0
		Loading SA ... done! state: good=1 eof=0 fail=0 bad=0; loaded 25156855213 bytes
		Loading SAindex ... done: 1565873619 bytes
		Finished loading the genome: Tue Jun 20 08:19:11 2017
		Finished loading the genome: Thu Jun 22 19:14:10 2017

		alignIntronMax=alignMatesGapMax=0, the max intron size will be approximately determined by (2^winBinNbits)*winAnchorDistNbins=589824
		Jun 20 08:19:11 ..... processing annotations GTF
		Processing sjdbGTFfile=/data/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf, found:
		Jun 22 19:14:10 ..... processing annotations GTF
		Processing sjdbGTFfile=/data/share/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf, found:
		199184 transcripts
		1176808 exons (non-collapsed)
		348697 collapsed junctions
		Jun 20 08:19:38 ..... finished GTF processing
		Jun 20 08:19:38 Loaded database junctions from the GTF file: /data/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf: 348697 total junctions
		Jun 22 19:14:34 ..... finished GTF processing
		Jun 22 19:14:34 Loaded database junctions from the GTF file: /data/share/ngs/genomes/Human/hg38/Homo_sapiens.GRCh38.84_chrsNamesUCSC.gtf: 348697 total junctions

		WARNING: long repeat for junction # 115413 : chr15 88855522 88855578; left shift = 14; right shift = 255
		WARNING: long repeat for junction # 157788 : chr18 46969610 47029116; left shift = 183; right shift = 255
		Jun 20 08:19:39 Finished preparing junctions
		Jun 20 08:19:39 ..... inserting junctions into the genome indices
		Jun 20 08:28:20 Finished SA search: number of new junctions=348621, old junctions=0
		Jun 20 08:28:49 Finished sorting SA indicesL nInd=68329716
		Jun 20 08:30:38 Finished inserting junction indices
		Jun 20 08:31:06 Finished SAi
		Jun 20 08:31:06 ..... finished inserting junctions into genome
		Jun 22 19:14:35 Finished preparing junctions
		Jun 22 19:14:35 ..... inserting junctions into the genome indices
		Jun 22 19:15:08 Finished SA search: number of new junctions=348621, old junctions=0
		Jun 22 19:15:34 Finished sorting SA indicesL nInd=68329716
		Jun 22 19:17:14 Finished inserting junction indices
		Jun 22 19:17:41 Finished SAi
		Jun 22 19:17:42 ..... finished inserting junctions into genome
		Created thread # 1
		Created thread # 2
		Created thread # 3
		Created thread # 4
		Created thread # 5
		Starting to map file # 0
		mate 1: /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz
		Thread #0 end of input stream, nextChar=-1
		mate 1: /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz
		Created thread # 6
		Created thread # 7
		Created thread # 8
		Created thread # 9
		Created thread # 10
		Created thread # 11
		Created thread # 12
		Created thread # 13
		Created thread # 14
		Thread #4 end of input stream, nextChar=-1
		Completed: thread #6
		Completed: thread #7
		Completed: thread #8
		Completed: thread #11
		Completed: thread #9
		Completed: thread #13
		Completed: thread #10
		Completed: thread #12
		Completed: thread #0
		Jun 20 08:32:03 Loaded database junctions from the 1st pass file: /data/share/htp/zUMIs_paper/GitHub_exampledata/example._STARpass1//SJ.out.tab: 370035 total junctions
		Completed: thread #14
		Completed: thread #4
		Completed: thread #1
		Joined thread # 1
		Completed: thread #2
		Joined thread # 2
		Completed: thread #3
		Joined thread # 3
		Joined thread # 4
		Completed: thread #5
		Joined thread # 5
		Joined thread # 6
		Joined thread # 7
		Joined thread # 8
		Joined thread # 9
		Joined thread # 10
		Joined thread # 11
		Joined thread # 12
		Joined thread # 13
		Joined thread # 14
		Jun 22 19:17:54 Loaded database junctions from the 1st pass file: /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example._STARpass1//SJ.out.tab: 368090 total junctions

		WARNING: long repeat for junction # 115413 : chr15 88855522 88855578; left shift = 14; right shift = 255
		WARNING: long repeat for junction # 157788 : chr18 46969610 47029116; left shift = 183; right shift = 255
		Jun 20 08:32:04 Finished preparing junctions
		Jun 20 08:32:04 ..... inserting junctions into the genome indices
		Jun 20 08:32:07 Finished SA search: number of new junctions=839, old junctions=348621
		Jun 20 08:32:08 Finished sorting SA indicesL nInd=164410
		Jun 20 08:34:01 Finished inserting junction indices
		Jun 20 08:34:08 Finished SAi
		Jun 20 08:34:08 ..... finished inserting junctions into genome
		Jun 22 19:17:56 Finished preparing junctions
		Jun 22 19:17:56 ..... inserting junctions into the genome indices
		Jun 22 19:17:57 Finished SA search: number of new junctions=718, old junctions=348621
		Jun 22 19:17:57 Finished sorting SA indicesL nInd=140694
		Jun 22 19:19:42 Finished inserting junction indices
		Jun 22 19:19:48 Finished SAi
		Jun 22 19:19:48 ..... finished inserting junctions into genome

		Input read files for mate 1, from input string /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz
		-rw-r--r-- 1 ziegenhain ngs 48683440 Jun 20 08:16 /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz
		Input read files for mate 1, from input string /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz
		-rw-r--r-- 1 parekh common 40267824 Jun 22 19:13 /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz

		readsCommandsFile:
		exec > "/data/share/htp/zUMIs_paper/GitHub_exampledata/example._STARtmp/tmp.fifo.read1"
		exec > "/data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example._STARtmp/tmp.fifo.read1"
		echo FILE 0
		zcat "/data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz"
		zcat "/data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz"

		Created thread # 1
		Created thread # 2
		Created thread # 3
		Created thread # 4
		Starting to map file # 0
		mate 1: /data/share/htp/zUMIs_paper/GitHub_exampledata/example.cdnaread.filtered.fastq.gz
		Thread #0 end of input stream, nextChar=-1
		mate 1: /data/share/common/scripts/UMI_pipeline/zUMIs/ExampleData/example.cdnaread.filtered.fastq.gz
		Created thread # 5
		Created thread # 6
		Created thread # 7
		Created thread # 8
		Created thread # 9
		Created thread # 10
		Created thread # 11
		Created thread # 12
		Created thread # 13
		Created thread # 14
		Thread #5 end of input stream, nextChar=-1
		Completed: thread #6
		Completed: thread #7
		Completed: thread #11
		Completed: thread #12
		Completed: thread #13
		Completed: thread #0
		Completed: thread #14
		Completed: thread #9
		Completed: thread #10
		Completed: thread #8
		Completed: thread #5
		Completed: thread #1
		Joined thread # 1
		Completed: thread #2
		Joined thread # 2
		Completed: thread #3
		Joined thread # 3
		Completed: thread #4
		Joined thread # 4
		Joined thread # 5
		Joined thread # 6
		Joined thread # 7
		Joined thread # 8
		Joined thread # 9
		Joined thread # 10
		Joined thread # 11
		Joined thread # 12
		Joined thread # 13
		Joined thread # 14
		ALL DONE!

ExampleData/example.Log.progress.out

+3 −4

Original line number	Diff line number	Diff line
		Time Speed Read Read Mapped Mapped Mapped Mapped Unmapped Unmapped Unmapped Unmapped
		M/hr number length unique length MMrate multi multi+ MM short other
		Jun 20 08:31:06 Started 1st pass mapping
		Jun 20 08:31:18 59.7 199105 50 61.1% 49.3 0.4% 32.4% 0.0% 0.0% 5.8% 0.7%
		Jun 20 08:32:03 Finished 1st pass mapping
		Jun 20 08:35:13 57.1 999985 50 61.3% 49.3 0.4% 32.3% 0.0% 0.0% 5.8% 0.7%
		Jun 22 19:17:42 Started 1st pass mapping
		Jun 22 19:17:47 42.5 59045 50 62.4% 49.4 0.3% 32.4% 0.0% 0.0% 4.5% 0.6%
		Jun 22 19:17:54 Finished 1st pass mapping
		ALL DONE!

ExampleData/example.SJ.out.tab

+2752 −4695

File changed.

Preview size limit exceeded, changes collapsed.

ExampleData/zUMIs_output/expression/example.dgecounts.rds

+1.8 MiB (4.04 MiB)

File changed.

No diff preview for this file type.

View original file

View changed file

Original line number	Diff line number	Diff line
		Started job on \| Jun 20 08:17:14
		Started mapping on \| Jun 20 08:34:10
		Finished on \| Jun 20 08:35:13
		Mapping speed, Million of reads per hour \| 57.14
		Started job on \| Jun 22 19:13:45
		Started mapping on \| Jun 22 19:19:51
		Finished on \| Jun 22 19:20:09
		Mapping speed, Million of reads per hour \| 170.66

		Number of input reads \| 999985
		Number of input reads \| 853296
		Average input read length \| 50
		UNIQUE READS:
		Uniquely mapped reads number \| 612559
		Uniquely mapped reads % \| 61.26%
		Average mapped length \| 49.32
		Number of splices: Total \| 41665
		Number of splices: Annotated (sjdb) \| 40984
		Number of splices: GT/AG \| 41012
		Number of splices: GC/AG \| 240
		Number of splices: AT/AC \| 43
		Number of splices: Non-canonical \| 370
		Mismatch rate per base, % \| 0.44%
		Uniquely mapped reads number \| 531550
		Uniquely mapped reads % \| 62.29%
		Average mapped length \| 49.33
		Number of splices: Total \| 36122
		Number of splices: Annotated (sjdb) \| 35553
		Number of splices: GT/AG \| 35560
		Number of splices: GC/AG \| 199
		Number of splices: AT/AC \| 41
		Number of splices: Non-canonical \| 322
		Mismatch rate per base, % \| 0.31%
		Deletion rate per base \| 0.01%
		Deletion average length \| 1.23
		Deletion average length \| 1.22
		Insertion rate per base \| 0.01%
		Insertion average length \| 1.25
		MULTI-MAPPING READS:
		Number of reads mapped to multiple loci \| 323350
		% of reads mapped to multiple loci \| 32.34%
		Number of reads mapped to too many loci \| 33
		Number of reads mapped to multiple loci \| 278255
		% of reads mapped to multiple loci \| 32.61%
		Number of reads mapped to too many loci \| 23
		% of reads mapped to too many loci \| 0.00%
		UNMAPPED READS:
		% of reads unmapped: too many mismatches \| 0.00%
		% of reads unmapped: too short \| 5.75%
		% of reads unmapped: other \| 0.65%
		% of reads unmapped: too short \| 4.41%
		% of reads unmapped: other \| 0.68%
		CHIMERIC READS:
		Number of chimeric reads \| 0
		% of chimeric reads \| 0.00%

Admin message