Commit b1391e46 authored by cziegenhain's avatar cziegenhain
Browse files

remove testing lines

parent 4e23bf92
Loading
Loading
Loading
Loading
+0 −13
Original line number Original line Diff line number Diff line
@@ -96,19 +96,6 @@ def main():


    args = parser.parse_args()
    args = parser.parse_args()


####
#bcs = load_bcs('zUMIs_output/hSkinkept_barcodes.txt')
#mols = load_dict('zUMIs_output/molecule_mapping/hSkin.', bcs)
#bam = 'hSkin.filtered.Aligned.GeneTagged.sorted.bam'
#chrs = pysam.idxstats(bam).split('\n')
#chrs = [c.split('\t')[0] for c in chrs[:-1]]
#pysam_workers = 3
#n_jobs = 10
#pool = mp.Pool(n_jobs)
#results = [pool.apply_async(correct_tags, (bam,pysam_workers,chr, )) for chr in chrs]
####


    bcs = load_bcs(args.bcs)
    bcs = load_bcs(args.bcs)
    print("Loading molecule correction dictionary...")
    print("Loading molecule correction dictionary...")
    global mols
    global mols