Commit aaf6b5f3 authored by sdparekh's avatar sdparekh
Browse files

fix splitfq for non-gz fastqfiles

parent c92d62fc

splitfq.sh

+1 −1
Original line number Diff line number Diff line
@@ -17,7 +17,7 @@ function splitfq() { 
	nl=`expr $n \* 4`

  pref=`basename $fqfile`

  d=`dirname $fqfile`

  split --lines=$nl --filter=''$pexc' -p '$nthreads' > $FILE.gz' $d/$fqfile $t$pref$project

  split --lines=$nl --filter=''$pexc' -p '$nthreads' > $FILE.gz' $fqfile $t$pref$project



	ls $t$pref$project* | sed "s|$t$pref$project||" > $t/$project.listPrefix.txt

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