Commit a901291e authored by Swati Parekh's avatar Swati Parekh
Browse files

corrected strandedness

parent 5a345de9
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+2 −2
Original line number Diff line number Diff line
@@ -21,8 +21,8 @@ option_list = list(
              help="Study name", metavar="character"),
  make_option(c("--cores"), type="integer", default=10,
              help="Number of threads", metavar="integer"),
  make_option(c("--strandedness"), type="logical", default=TRUE,
              help="Is your RNA-seq library stranded?", metavar="logical"),
  make_option(c("--strandedness"), type="integer", default=0,
              help="0 unsranded, 1 stranded, 2 reverse stranded", metavar="integer"),
  make_option(c("--bcstart"), type="integer", default=1,
              help="Start position of cell barcode in the read", metavar="integer"),
  make_option(c("--bcend"), type="integer", default=6,