fixed Rsubread install issue (a8c638c3) · Commits · github_fork / ZUMIs

zUMIs-dge.R

+5 −1

Original line number	Diff line number	Diff line
		@@ -65,7 +65,11 @@ if(length(grep("Rsubread",installed.packages()))==0){
		if(installed.packages()[grep("Rsubread",installed.packages()),"Version"] != "1.26.0"){
		print("I need Rsubread 1.26.0 so I am installing it...")
		install.packages("https://bioarchive.galaxyproject.org/Rsubread_1.26.0.tar.gz", repos = NULL, type = "source")
		if(length(grep("Rsubread",installed.packages()))==1){
		bla<-data.frame(t(installed.packages()[grep("Rsubread",installed.packages()),c("LibPath","Version")]),row.names = NULL)
		}else{
		bla<-data.frame((installed.packages()[grep("Rsubread",installed.packages()),c("LibPath","Version")]),row.names = NULL)
		}
		library("Rsubread", lib.loc=as.character(bla[bla$Version %in% "1.26.0", "LibPath"]))
		}else{
		print("I am loading Rsubread 1.26.0...")