Loading README.md +1 −1 Original line number Diff line number Diff line Loading @@ -31,7 +31,7 @@ bash zUMIs-master.sh -f barcoderead.fastq -r cdnaread.fastq -n test -g hg38_STAR - -m <XM baserange> : Base range for UMI barcode in -f Barcode read(e.g. 7-16). Required. For STRT-seq give this as 1-n where n is your UMI barcode length. - -l <readlength> : Read length of -r cDNA reads (e.g. 50). Required. For STRT-seq give this as a total length of your cdna read (length(umicdna)-length(umi)-BaseTrim). For STRT-seq give this as a total length of your umicdna reads. ### Default parameters - -z <cellbcbase> : Cell barcodes with (-z)number of bases under the base quality(-q) is filtered out. Default: 1. Loading Loading
README.md +1 −1 Original line number Diff line number Diff line Loading @@ -31,7 +31,7 @@ bash zUMIs-master.sh -f barcoderead.fastq -r cdnaread.fastq -n test -g hg38_STAR - -m <XM baserange> : Base range for UMI barcode in -f Barcode read(e.g. 7-16). Required. For STRT-seq give this as 1-n where n is your UMI barcode length. - -l <readlength> : Read length of -r cDNA reads (e.g. 50). Required. For STRT-seq give this as a total length of your cdna read (length(umicdna)-length(umi)-BaseTrim). For STRT-seq give this as a total length of your umicdna reads. ### Default parameters - -z <cellbcbase> : Cell barcodes with (-z)number of bases under the base quality(-q) is filtered out. Default: 1. Loading
