deal with null correctly (6e56edee) · Commits · github_fork / ZUMIs

zUMIs-mapping.R

+4 −2

Original line number	Diff line number	Diff line
		@@ -10,7 +10,9 @@ additional_fq <- inp$reference$additional_files
		samtools <- inp$samtools_exec
		STAR_exec <- inp$STAR_exec

		if(is.null(inp$mem_limit) \| inp$mem_limit == 0){
		if(is.null(inp$mem_limit)){
		inp$mem_limit <- 100
		}else if(inp$mem_limit == 0){
		inp$mem_limit <- 100
		}

		@@ -149,6 +151,6 @@ if(num_star_instances>1 & inp$which_Stage == "Filtering"){

		#clean up chunked bam files
		if(inp$which_Stage == "Filtering"){
		system(paste0("rm ",tmpfolder,"/",inp$project,".*"))
		# system(paste0("rm ",tmpfolder,"/",inp$project,".*"))
		}
		q()