Unverified Commit 3a786f89 authored by cziegenhain's avatar cziegenhain Committed by GitHub
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Merge pull request #285 from xaviml/patch-1

cat / head change in zUMIs.sh
parents 60f7965c e0a12c31
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+1 −1
Original line number Diff line number Diff line
@@ -247,7 +247,7 @@ if [[ "${whichStage}" == "Filtering" ]] ; then
      pref=$(basename ${f} .gz)
      l=$(ls ${tmpMerge}${pref}* | sed "s|${tmpMerge}${pref}||" | sed 's/.gz//')
  else
      cat ${f} | head -n 4000000 > ${tmpMerge}/${project}.1mio.check.fq
      head -n 4000000 ${f} > ${tmpMerge}/${project}.1mio.check.fq
      smallsize=$(stat --printf="%s" ${tmpMerge}/${project}.1mio.check.fq)
      rm ${tmpMerge}/${project}.1mio.check.fq
      nreads=$(expr ${fullsize} \* 1000000 / ${smallsize})