typo (3985416c) · Commits · github_fork / ZUMIs

misc/merge_demultiplexed_fastq.R

+1 −1

Original line number	Original line	Diff line number	Diff line
	@@ -57,7 +57,7 @@ samples[, sample := tstrsplit(r1, file_delim_r1, keep = 1)][

	outfile_r1 <- paste0(opt$dir,"/reads_for_zUMIs.R1.fastq.gz")		outfile_r1 <- paste0(opt$dir,"/reads_for_zUMIs.R1.fastq.gz")
	outfile_r2 <- paste0(opt$dir,"/reads_for_zUMIs.R2.fastq.gz")		outfile_r2 <- paste0(opt$dir,"/reads_for_zUMIs.R2.fastq.gz")
	outfile_index <- paste0(opt$dir,"/reads_for_zUMIs.index.fastq")		outfile_index <- paste0(opt$dir,"/reads_for_zUMIs.index.fastq.gz")

	for(i in seq(nrow(samples))){		for(i in seq(nrow(samples))){
	system(paste("cat", paste(opt$dir,samples[i]$r1,sep = "/"), ">>", outfile_r1))		system(paste("cat", paste(opt$dir,samples[i]$r1,sep = "/"), ">>", outfile_r1))