@@ -29,7 +29,7 @@ We provide a script to convert zUMIs output into loom file automatically based o
zUMIs will try to automatically do this, otherwise convert zUMIs output to loom by simply running `Rscript rds2loom.R myRun.yaml`.
## Changelog
05 July 2020: [zUMIs2.9.0 released](https://github.com/sdparekh/zUMIs/releases/tag/2.7.0): Speed up STAR read mapping by parallel instances if enough resources are available. Change the main zUMIs script to `zUMIs.sh`. Speed up and reduce clutter by loading reads from bam files using parallelised Rsamtools calls instead of printing temporary text files. Speed up counting by parallelising exon / intron / exon+intron counting as well as downsamplings. Speed up by parallelising creation of wide format count matrices.
05 July 2020: [zUMIs2.9.0 released](https://github.com/sdparekh/zUMIs/releases/tag/2.9.0): Speed up STAR read mapping by parallel instances if enough resources are available. Change the main zUMIs script to `zUMIs.sh`. Speed up and reduce clutter by loading reads from bam files using parallelised Rsamtools calls instead of printing temporary text files. Speed up counting by parallelising exon / intron / exon+intron counting as well as downsamplings. Speed up by parallelising creation of wide format count matrices.
23 June 2020: zUMIs2.8.3: Merged code contribution from @gringer: prevent errors by emitting SAM headers in chunked unmapped .bam file output of fqfilter. Changed call to STAR to prevent stalling of samtools pipe.
