small README fixes (235420a8) · Commits · github_fork / ZUMIs

README.md

+2 −2

Original line number	Diff line number	Diff line
		@@ -9,7 +9,7 @@ The input to this pipeline is paired-end fastq files, where one read contains th
		You can read more about zUMIs in our [biorxiv preprint](http://www.biorxiv.org/content/early/2017/06/22/153940)!

		## Installation
		zUMIs is a wrapper around shell using scripts written in perl, shell and R. zUMIs can be installed by cloning and installing the dependencies as given below.
		zUMIs is a command line tool written in perl, shell and R. zUMIs can be installed by cloning and installing the dependencies as given below.

		```
		git clone https://github.com/sdparekh/zUMIs.git
		@@ -44,7 +44,7 @@ ipak <- function(pkg, repository = c("CRAN", "Bioconductor", "github")) {
		}

		#CRAN packages
		cranpackages <- c("dplyr","tidyr","parallel","reshape2","data.table","optparse","cowplot","pastecs")
		cranpackages <- c("dplyr","tidyr","parallel","reshape2","data.table","optparse","cowplot")
		ipak(cranpackages, repository = "CRAN")

		# BIOCONDUCTOR packages