Commit 119b3221 authored by Swati Parekh's avatar Swati Parekh
Browse files

saving count tables as text files

parent 93ee1496

zUMIs-dge.R

+1 −0
Original line number Diff line number Diff line
@@ -382,6 +382,7 @@ if(subsampling!= "0") { 
}



saveRDS(AllCounts,file=paste(out,"/zUMIs_output/expression/",sn,".dgecounts.rds",sep=""))

lapply(names(AllCounts),function(x) lapply(names(AllCounts[[x]])[-3], function(xx) write.table(AllCounts[[x]][xx],file=paste(out,"/zUMIs_output/expression/",sn,xx,".",x,".txt",sep=""),sep = "\t",row.names = T,col.names = T)))



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