zUMIs with combined in/ex bam and umitools alpha

                                 Started job on |	Aug 09 17:01:12

                             Started mapping on |	Aug 09 17:08:26

                                    Finished on |	Aug 09 17:08:51

       Mapping speed, Million of reads per hour |	122.87

                          Number of input reads |	853296

                      Average input read length |	50

                                    UNIQUE READS:

                   Uniquely mapped reads number |	531741

                        Uniquely mapped reads % |	62.32%

                          Average mapped length |	49.33

                       Number of splices: Total |	36018

            Number of splices: Annotated (sjdb) |	35142

                       Number of splices: GT/AG |	35457

                       Number of splices: GC/AG |	198

                       Number of splices: AT/AC |	41

               Number of splices: Non-canonical |	322

                      Mismatch rate per base, % |	0.31%

                         Deletion rate per base |	0.01%

                        Deletion average length |	1.22

                        Insertion rate per base |	0.01%

                       Insertion average length |	1.25

                             MULTI-MAPPING READS:

        Number of reads mapped to multiple loci |	278062

             % of reads mapped to multiple loci |	32.59%

        Number of reads mapped to too many loci |	23

             % of reads mapped to too many loci |	0.00%

                                  UNMAPPED READS:

       % of reads unmapped: too many mismatches |	0.00%

                 % of reads unmapped: too short |	4.42%

                     % of reads unmapped: other |	0.68%

                                  CHIMERIC READS:

                       Number of chimeric reads |	0

                            % of chimeric reads |	0.00%

           Time    Speed        Read     Read   Mapped   Mapped   Mapped   Mapped Unmapped Unmapped Unmapped Unmapped

                    M/hr      number   length   unique   length   MMrate    multi   multi+       MM    short    other

ALL DONE!