Commit fa68e325 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

allow running setup on compressed files if translation is missing for 10x

parent 29cfd3ba
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+1 −1
Original line number Diff line number Diff line
@@ -2463,7 +2463,7 @@ if [[ $lock -eq 0 ]]; then
    fi
        if [[ -f translation/${v3}.gz ]]; then
            rm translation/${v3}.gz
            awk -F , -v OFS="\t" '{print $1, "\t", $1}' $v3 > translation/${v3}
            zcat ${v3}.gz | awk -F , -v OFS="\t" '{print $1, "\t", $1}' > translation/${v3}
            gzip -f translation/${v3}
        fi
        gzip -f ${v3}