Loading launch_universc.sh +2 −1 Original line number Original line Diff line number Diff line Loading @@ -1776,7 +1776,8 @@ for fq in "${read12[@]}"; do fi fi sn=`echo ${name} | cut -f 1-$((${name_fields} - 4)) -d'_'` sn=`echo ${name} | cut -f 1-$((${name_fields} - 4)) -d'_'` # removes leading zeroes from lane number # removes leading zeroes from lane number lane=`echo ${name} | cut -f $((${fields} - 2)) -d'_' | perl -pn -e 's/L0([123456789][0123456789])/\$1/' | perl -pn -e 's/L00([0123456789])/\$1/'` lane=`echo ${name} | cut -f $((${fields} - 2)) -d'_' | perl -pn -e 's/L0([123456789][0123456789])/\1/' | perl -pn -e 's/L00([0123456789])/\1/'` echo "lane:" $lane # sets lane to 0 if none found # sets lane to 0 if none found if [[ -z ${lane} ]]; then if [[ -z ${lane} ]]; then lane=0 lane=0 Loading Loading
launch_universc.sh +2 −1 Original line number Original line Diff line number Diff line Loading @@ -1776,7 +1776,8 @@ for fq in "${read12[@]}"; do fi fi sn=`echo ${name} | cut -f 1-$((${name_fields} - 4)) -d'_'` sn=`echo ${name} | cut -f 1-$((${name_fields} - 4)) -d'_'` # removes leading zeroes from lane number # removes leading zeroes from lane number lane=`echo ${name} | cut -f $((${fields} - 2)) -d'_' | perl -pn -e 's/L0([123456789][0123456789])/\$1/' | perl -pn -e 's/L00([0123456789])/\$1/'` lane=`echo ${name} | cut -f $((${fields} - 2)) -d'_' | perl -pn -e 's/L0([123456789][0123456789])/\1/' | perl -pn -e 's/L00([0123456789])/\1/'` echo "lane:" $lane # sets lane to 0 if none found # sets lane to 0 if none found if [[ -z ${lane} ]]; then if [[ -z ${lane} ]]; then lane=0 lane=0 Loading
