updating README

as described in [Bug Reports](#Issues) below.

Some changes to the Cell Ranger install are required to run other technologies. Therefore we provide settings for 10x Genomics

which restores settings for the Chromium instrument. We therefore recommend using 'convert' for processing all data from different

which restores settings for the Chromium instrument. We therefore recommend using UnicerSC for processing all data from different

technologies as the tool manages these changes. Please note that on a single install of Cell Ranger, multiple technologies or multiple samples 

of the same technology with different whitelist barcodes cannot be run cannot be run simultaneousely (the tool will also check for this to

avoid causing problems with existing runs). Multiple samples of the same technology with the same barcode whitelist can be run simultaneously.

docker pull tomkellygenetics/universc:latest

```

Then you can run convert with:

Then you can run UniverSC with:

```

run -it tomkellygenetics/universc:latest launch_universc.sh

docker run -it tomkellygenetics/universc:latest launch_universc.sh

```

You can open a shell in the docker image with:

```

run -it tomkellygenetics/universc:latest /bin/bash

docker run -it tomkellygenetics/universc:latest /bin/bash

```

```

run -it tomkellygenetics/universc:latest /bin/zsh 

docker run -it tomkellygenetics/universc:latest /bin/zsh 

```

Either of these shells are supported.

#### Running launch_universc.sh on 10x data

```

# call convert on 10x with multiple lanes

# call UniverSC on 10x with multiple lanes

bash /universc/launch_universc.sh --id "test-10x-v3" --technology "10x" \

 --reference "/universc/test/cellranger_reference/cellranger-tiny-ref/3.0.0" \

 --file "/universc/test/shared/cellranger-tiny-fastq/3.0.0/tinygex_S1_L001" \

rm ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/barcodes/.lock

```

When doing this *please ensure that no other instances are running* for Cell Ranger

convert.

When doing this *please ensure that no other instances are running* for UniverSC.

You can also see the current configuration of UniverSC for each Cell Ranger

install as follows: