Loading launch_universc.sh +2 −2 Original line number Diff line number Diff line Loading @@ -1445,9 +1445,9 @@ for key in ${keys[@]}; do echo " renaming $read ..." fi k=$((${j} + 1)) rename -f "s/_L([0-9][0123456789][0123456789])/_S${k}_L\$1/" ${read}* rename -f "s/_L([0123456789][0123456789][0123456789])/_S${k}_L\1/" ${read}* #update file variable read=`echo $read | sed -e "s/_L([0-9][0123456789][0123456789])/_S${k}_L\$1/g"` read=`echo $read | sed -e "s/_L\([0123456789][0123456789][0123456789]\)/_S${k}_L\1/g"` list[$j]=$read ;; esac Loading test/run_tests_icell8_local.sh +2 −2 Original line number Diff line number Diff line Loading @@ -68,7 +68,7 @@ bash launch_universc.sh --id "test-icell8-72618_KU812-2-lanes" --technology "iCe --read1 "test/shared/icell8-test/72618_KU812_L001_R1_001.fastq" "test/shared/icell8-test/72618_KU812_L002_R1_001.fastq" \ --read2 "test/shared/icell8-test/72618_KU812_L001_R2_001.fastq" "test/shared/icell8-test/72618_KU812_L002_R2_001.fastq" \ --barcodefile "test/shared/icell8-test/WellList.txt" \ --per-cell-data --jobmode "local" --localcores 2 --localmem 4 --per-cell-data --jobmode "local" --localcores 2 --localmem 4 --verbose if [ -f test/shared/icell8-test/72618_KU812_S1_L001_R1_001.fastq ]; then rename "s/_S1_L001/_L001/" test/shared/icell8-test/72618_KU812_S1_L001_R1_001.fastq* Loading @@ -93,7 +93,7 @@ bash launch_universc.sh --id "test-icell8-72618_KU812-1-lane" --technology "iCel --read1 "test/shared/icell8-test/72618_KU812_L001_R1_001.fastq" \ --read2 "test/shared/icell8-test/72618_KU812_L001_R2_001.fastq" \ --barcodefile "test/shared/icell8-test/WellList.txt" \ --per-cell-data --jobmode "local" --localcores 2 --localmem 4 --per-cell-data --jobmode "local" --localcores 2 --localmem 4 --verbose if [ -f test/shared/icell8-test/72618_KU812_S1_L001_R1_001.fastq ]; then rename "s/_S1_L001/_L001/" test/shared/icell8-test/72618_KU812_S1_L001_R1_001.fastq* Loading Loading
launch_universc.sh +2 −2 Original line number Diff line number Diff line Loading @@ -1445,9 +1445,9 @@ for key in ${keys[@]}; do echo " renaming $read ..." fi k=$((${j} + 1)) rename -f "s/_L([0-9][0123456789][0123456789])/_S${k}_L\$1/" ${read}* rename -f "s/_L([0123456789][0123456789][0123456789])/_S${k}_L\1/" ${read}* #update file variable read=`echo $read | sed -e "s/_L([0-9][0123456789][0123456789])/_S${k}_L\$1/g"` read=`echo $read | sed -e "s/_L\([0123456789][0123456789][0123456789]\)/_S${k}_L\1/g"` list[$j]=$read ;; esac Loading
test/run_tests_icell8_local.sh +2 −2 Original line number Diff line number Diff line Loading @@ -68,7 +68,7 @@ bash launch_universc.sh --id "test-icell8-72618_KU812-2-lanes" --technology "iCe --read1 "test/shared/icell8-test/72618_KU812_L001_R1_001.fastq" "test/shared/icell8-test/72618_KU812_L002_R1_001.fastq" \ --read2 "test/shared/icell8-test/72618_KU812_L001_R2_001.fastq" "test/shared/icell8-test/72618_KU812_L002_R2_001.fastq" \ --barcodefile "test/shared/icell8-test/WellList.txt" \ --per-cell-data --jobmode "local" --localcores 2 --localmem 4 --per-cell-data --jobmode "local" --localcores 2 --localmem 4 --verbose if [ -f test/shared/icell8-test/72618_KU812_S1_L001_R1_001.fastq ]; then rename "s/_S1_L001/_L001/" test/shared/icell8-test/72618_KU812_S1_L001_R1_001.fastq* Loading @@ -93,7 +93,7 @@ bash launch_universc.sh --id "test-icell8-72618_KU812-1-lane" --technology "iCel --read1 "test/shared/icell8-test/72618_KU812_L001_R1_001.fastq" \ --read2 "test/shared/icell8-test/72618_KU812_L001_R2_001.fastq" \ --barcodefile "test/shared/icell8-test/WellList.txt" \ --per-cell-data --jobmode "local" --localcores 2 --localmem 4 --per-cell-data --jobmode "local" --localcores 2 --localmem 4 --verbose if [ -f test/shared/icell8-test/72618_KU812_S1_L001_R1_001.fastq ]; then rename "s/_S1_L001/_L001/" test/shared/icell8-test/72618_KU812_S1_L001_R1_001.fastq* Loading
