configure GitHub Actions for calling tests in Docker (edd99783) · Commits · github_fork / Universc

.github/workflows/docker-ci.yml

+20 −0

Original line number	Diff line number	Diff line
		@@ -22,6 +22,25 @@ jobs:
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false

		push:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}

		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		@@ -29,3 +48,4 @@ jobs:
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: true

+42 −0

Original line number	Diff line number	Diff line
		name: Test 10x Genomics
		on: push
		jobs:
		login:
		runs-on: ubuntu-20.04
		steps:
		-
		name: Login to DockerHub
		uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}

		test:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2
		- uses: docker/setup-buildx-action@v1
		- uses: docker/login-action@v1
		with:
		username: ${{ secrets.DOCKER_HUB_USERNAME }}
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}
		- name: Build and push
		uses: docker/build-push-action@v2
		with:
		context: ./
		file: ./Dockerfile
		tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest
		push: false
		- name: Run image
		run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w tomkellygenetics/universc:1.0.2 echo "hello from universc"
		- name: Call UniverSC
		uses: addnab/docker-run-action@v1
		with:
		image: tomkellygenetics/universc:latest
		run: bash /universc/test/test_call.sh
		- name: Run image
		run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w tomkellygenetics/universc:1.0.2 bash /universc/test/run_tests_10x.sh
		- name: Call UniverSC
		uses: addnab/docker-run-action@v1
		with:
		image: tomkellygenetics/universc:latest
		run: bash /universc/test/run_tests_10x.sh

		build:
		runs-on: ubuntu-20.04
		steps:
		- uses: actions/checkout@v2

+9 −1

Original line number	Diff line number	Diff line
		name: Docker Test
		name: Docker Test Calling Dependencies
		on: push
		jobs:
		test:
		@@ -15,11 +15,19 @@ jobs:
		with:
		image: docker:latest
		run: echo "hello world"
		- name: Pull Docker image
		run: docker pull tomkellygenetics/cellranger_clean:3.0.2
		- name: Run image
		run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w tomkellygenetics/cellranger_clean:3.0.2 echo "hello from cellranger_clean"
		- name: Call Cell Ranger
		uses: addnab/docker-run-action@v1
		with:
		image: tomkellygenetics/cellranger_clean:3.0.2
		run: echo "cellranger:" $(which cellranger)
		- name: Pull Docker image
		run: docker pull tomkellygenetics/universc:1.0.2
		- name: Run image
		run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w tomkellygenetics/universc:1.0.2 echo "hello from universc"
		- name: Call UniverSC
		uses: addnab/docker-run-action@v1
		with:

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