Commit ec980d8e authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

restore disabling checks and cloupe

parent 170fc43a
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+2 −1
Original line number Diff line number Diff line
@@ -1525,6 +1525,7 @@ if [[ $lock -eq 0 ]]; then
    if [[ $verbose  ]]; then
        echo "${cellrangerversion}"
        echo "${cellrangerversion} 3.0.0" | tr " " "\n" | sort -V | head -n 1
        echo "last call: $lastcall_p"
    fi
    if [[ $(echo "${cellrangerversion} 3.0.0" | tr " " "\n" | sort -V | tail -n 1)  == ${cellrangerversion} ]]; then
        if [[ $verbose  ]]; then
@@ -1547,7 +1548,7 @@ if [[ $lock -eq 0 ]]; then
            fi
            sed -i '/output_for_cloupe/s/^#*#//g' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro
            sed -i '/out cloupe cloupe/ {s/^#*#//g}' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro
        elif [[ $lastcall == "10x" ]] || [[ ! -f $lastcallfile ]]; then
        elif [[ $lastcall_p == "default:10x" ]] || [[ ! -f $lastcallfile ]]; then
            #disable checking barcodes
            if [[ $verbose  ]]; then
                 echo "disable barcode checks"