minor bug fix (ebc5529e) · Commits · github_fork / Universc

launch_universc.sh

+36 −37

Original line number	Diff line number	Diff line
		@@ -957,7 +957,6 @@ elif [[ "$chemistry" != "$temp_chemistry" ]]; then
		echo "*WARNING: chemistry is set to ${chemistry} where ${temp_chemistry} would have been chosen automatically. proceed with caution.*"
		fi


		#set default barcode and umi lengths
		if [[ $minlength -gt 16 ]]; then
		barcode_default=$minlength
		@@ -1564,7 +1563,6 @@ if [[ "$technology" == "indrop-v3" ]] \|\| [[ "$technology" == "icell8-full-lengt
		fi
		fi


		if [[ "$technology" == "quartz-seq" ]] \|\| [[ "$technology" == "ramda-seq" ]] \|\| [[ "$technology" == "strt-seq-c1" ]]; then
		echo "dual indexes I1 and I2 required for $technology"
		if [[ ${#index2[@]} -le 1 ]]; then
		@@ -2055,9 +2053,10 @@ if [[ "$technology" == "smartseq" ]] \|\| [[ "$technology" == "smartseq3" ]] \|\| [[
		fi
		if [[ "$chemistry" != "SC5P-PE" ]] && [[ "$chemistry" != "SC5P-R1" ]] && [[ "$chemistry" != "SC5P-R2" ]]; then
		echo "Error: option --chemistry must be SC5P-PE, SC5P-R1 or SC5P-R2"
		exit
		exit 1
		fi
		fi
		chemistry="SC3Pv2" #####KAI REMEMBER TO REMOVE THIS#####
		##########

LFS

−365 KiB (131 B)

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